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root/gclib/gclib/GAlnExtend.cpp
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Revision 310 - (view) (annotate) - [select for diffs]
Modified Fri Mar 22 20:06:27 2013 UTC (6 years, 2 months ago) by gpertea
File length: 35900 byte(s)
Diff to previous 301 , to selected 173
sync with igm repo

Revision 301 - (view) (annotate) - [select for diffs]
Modified Fri Oct 26 12:44:32 2012 UTC (6 years, 6 months ago) by gpertea
File length: 35870 byte(s)
Diff to previous 193 , to selected 173
minor refactoring


Revision 193 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 23:44:04 2012 UTC (7 years, 3 months ago) by gpertea
File length: 35884 byte(s)
Diff to previous 191 , to selected 173

Revision 191 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 23:33:25 2012 UTC (7 years, 3 months ago) by gpertea
File length: 35885 byte(s)
Diff to previous 188 , to selected 173

Revision 188 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 05:42:37 2012 UTC (7 years, 3 months ago) by gpertea
File length: 39926 byte(s)
Diff to previous 181 , to selected 173
fqtrim works

Revision 181 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:24:29 2012 UTC (7 years, 3 months ago) by gpertea
File length: 39737 byte(s)
Diff to previous 178 , to selected 173
fqtrim works

Revision 178 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 07:10:45 2012 UTC (7 years, 3 months ago) by gpertea
File length: 40982 byte(s)
Diff to previous 176 , to selected 173
fqtrim

Revision 176 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 03:47:16 2012 UTC (7 years, 3 months ago) by gpertea
File length: 40306 byte(s)
Diff to previous 174 , to selected 173
fqtrim reworked

Revision 174 - (view) (annotate) - [select for diffs]
Modified Wed Feb 15 21:04:38 2012 UTC (7 years, 3 months ago) by gpertea
File length: 40185 byte(s)
Diff to previous 173
wip fqtrim

Revision 173 - (view) (annotate) - [selected]
Modified Wed Feb 15 03:34:29 2012 UTC (7 years, 3 months ago) by gpertea
File length: 40292 byte(s)
Diff to previous 171
wip fqtrim

Revision 171 - (view) (annotate) - [select for diffs]
Modified Tue Feb 14 22:36:26 2012 UTC (7 years, 3 months ago) by gpertea
File length: 39886 byte(s)
Diff to previous 109 , to selected 173
wip fqtrim

Revision 109 - (view) (annotate) - [select for diffs]
Modified Tue Oct 11 19:50:14 2011 UTC (7 years, 7 months ago) by gpertea
File length: 39739 byte(s)
Diff to previous 104 , to selected 173
added GStr::reverse(), GAlnExtend stringency tweaks

Revision 104 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 19:34:20 2011 UTC (7 years, 7 months ago) by gpertea
File length: 39728 byte(s)
Diff to previous 101 , to selected 173
fixed GVec, GArray to use new[] instead of malloc

Revision 101 - (view) (annotate) - [select for diffs]
Modified Fri Oct 7 21:13:55 2011 UTC (7 years, 7 months ago) by gpertea
File length: 38519 byte(s)
Diff to previous 99 , to selected 173
adjusting params

Revision 99 - (view) (annotate) - [select for diffs]
Modified Thu Oct 6 20:49:17 2011 UTC (7 years, 7 months ago) by gpertea
File length: 35461 byte(s)
Diff to previous 96 , to selected 173
wip

Revision 96 - (view) (annotate) - [select for diffs]
Modified Wed Oct 5 18:31:48 2011 UTC (7 years, 7 months ago) by gpertea
File length: 31760 byte(s)
Diff to previous 93 , to selected 173
moved match_LeftEnd() and match_RightEnd() to GAlnExtend

Revision 93 - (view) (annotate) - [select for diffs]
Added Tue Oct 4 12:27:31 2011 UTC (7 years, 7 months ago) by gpertea
File length: 27397 byte(s)
Diff to selected 173
added gapped alignment extension code

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