ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/gclib/GAlnExtend.cpp
(Generate patch)
# Line 230 | Line 230
230         nificantly better than this */
231  
232      max_dist = GMIN(GREEDY_MAX_COST,
233 <                   len2 / GREEDY_MAX_COST_FRACTION + 1);
233 >                   (len2/GREEDY_MAX_COST_FRACTION + 1));
234  
235      /* the main loop assumes that the index of all diagonals is
236         biased to lie in the middle of allocated bookkeeping
# Line 888 | Line 888
888                              reward, penalty, s_ext_r, q_ext_r, *gxmem, ed_script_fwd);
889      //check extension here and bail out if not a good right extension
890      //assuming s_max is really at the right end of s_seq
891 <    if (trim!=NULL && trim->type==galn_TrimRight && s_alnstart+s_ext_r<trim->boundary) {
891 >    if (trim!=NULL && trim->type==galn_TrimRight &&
892 >           s_alnstart+s_ext_r<trim->boundary) {
893        delete ed_script_fwd;
894        if (freeAlnMem) delete gxmem;
895        return NULL;

Diff Legend

Removed lines
+ Added lines
< Changed lines
> Changed lines