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root/gclib/gclib/GAlnExtend.h
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# Line 633 | Line 633
633    void calc_amlen() {
634      if (alen) {
635         int ah=iround(double(alen)*0.8);
636 <       if (ah<12) ah=12;
636 >       if (ah<16) ah=16;
637         if (amlen>ah) amlen=ah;
638         }
639      }
640    void calc_bmlen() {
641      if (blen) {
642        int bh = iround(double(alen)*0.6);
643 <      if (bh<12) bh=12;
643 >      if (bh<16) bh=16;
644        if (amlen>bh) amlen=bh;
645        }
646      }
# Line 758 | Line 758
758     int alnlen=alninfo->sr - alninfo->sl + 1;
759     if (alninfo->pid>90.0 && alnlen>safelen) {
760             //special case: heavy match, could be in the middle
761 <           if (alninfo->pid>95) alninfo->strong=true;
761 >           if (alninfo->pid>94)
762 >                    alninfo->strong=true;
763             return true;
764         }
765     int sl=alninfo->sl;

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