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root/gclib/gclib/GAlnExtend.h
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# Line 618 | Line 618
618   GXAlnInfo* GreedyAlign(const char* q_seq,  int q_alnstart, const char* s_seq, int s_alnstart,
619          bool editscript=false, int reward=2, int penalty=3, int xdrop=8);
620  
621 + GXAlnInfo* match_LeftEnd(const char* seqa, int seqa_len, const char* seqb, int seqb_len,
622 +          SGreedyAlignMem* gxmem, int match_reward=2, int mismatch_penalty=3, int Xdrop=8);
623 + GXAlnInfo* match_RightEnd(const char* seqa, int seqa_len, const char* seqb, int seqb_len,
624 +            SGreedyAlignMem* gxmem, int match_reward=2, int mismatch_penalty=3, int Xdrop=8);
625   #endif

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