Revision 194 - (view) (annotate) - [select for diffs]
Modified Tue Feb 21 21:19:11 2012 UTC (7 years, 7 months ago) by gpertea
File length: 25051 byte(s)
Diff to previous 191

increased "safe length" for an alignment from 16 to 22

Revision 191 - (view) (annotate) - [select for diffs]
Modified Fri Feb 17 23:33:25 2012 UTC (7 years, 8 months ago) by gpertea
File length: 25051 byte(s)
Diff to previous 186

Revision 186 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 22:15:58 2012 UTC (7 years, 8 months ago) by gpertea
File length: 24517 byte(s)
Diff to previous 184

adjust safelen threshold from 12 to 16

Revision 184 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:59:44 2012 UTC (7 years, 8 months ago) by gpertea
File length: 24511 byte(s)
Diff to previous 181

works

Revision 181 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 21:24:29 2012 UTC (7 years, 8 months ago) by gpertea
File length: 24420 byte(s)
Diff to previous 178

fqtrim works

Revision 178 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 07:10:45 2012 UTC (7 years, 8 months ago) by gpertea
File length: 23094 byte(s)
Diff to previous 176

fqtrim

Revision 176 - (view) (annotate) - [select for diffs]
Modified Thu Feb 16 03:47:16 2012 UTC (7 years, 8 months ago) by gpertea
File length: 22987 byte(s)
Diff to previous 174

fqtrim reworked

Revision 174 - (view) (annotate) - [select for diffs]
Modified Wed Feb 15 21:04:38 2012 UTC (7 years, 8 months ago) by gpertea
File length: 21984 byte(s)
Diff to previous 173

wip fqtrim

Revision 173 - (view) (annotate) - [select for diffs]
Modified Wed Feb 15 03:34:29 2012 UTC (7 years, 8 months ago) by gpertea
File length: 21893 byte(s)
Diff to previous 171

wip fqtrim

Revision 171 - (view) (annotate) - [select for diffs]
Modified Tue Feb 14 22:36:26 2012 UTC (7 years, 8 months ago) by gpertea
File length: 21825 byte(s)
Diff to previous 144

wip fqtrim

Revision 144 - (view) (annotate) - [select for diffs]
Modified Thu Dec 22 19:15:46 2011 UTC (7 years, 9 months ago) by gpertea
File length: 21727 byte(s)
Diff to previous 109

added GBitVec.h; removed operator> requirement for sorted vectors; swap() is now template Gswap()

Revision 109 - (view) (annotate) - [select for diffs]
Modified Tue Oct 11 19:50:14 2011 UTC (8 years ago) by gpertea
File length: 22111 byte(s)
Diff to previous 106

added GStr::reverse(), GAlnExtend stringency tweaks

Revision 106 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 21:45:05 2011 UTC (8 years ago) by gpertea
File length: 22022 byte(s)
Diff to previous 104

Revision 104 - (view) (annotate) - [select for diffs]
Modified Mon Oct 10 19:34:20 2011 UTC (8 years ago) by gpertea
File length: 22007 byte(s)
Diff to previous 101

fixed GVec, GArray to use new[] instead of malloc

Revision 101 - (view) (annotate) - [select for diffs]
Modified Fri Oct 7 21:13:55 2011 UTC (8 years ago) by gpertea
File length: 21827 byte(s)
Diff to previous 99

adjusting params

Revision 99 - (view) (annotate) - [select for diffs]
Modified Thu Oct 6 20:49:17 2011 UTC (8 years ago) by gpertea
File length: 19319 byte(s)
Diff to previous 96

wip

Revision 96 - (view) (annotate) - [select for diffs]
Modified Wed Oct 5 18:31:48 2011 UTC (8 years ago) by gpertea
File length: 19161 byte(s)
Diff to previous 93

moved match_LeftEnd() and match_RightEnd() to GAlnExtend

Revision 93 - (view) (annotate) - [select for diffs]
Added Tue Oct 4 12:27:31 2011 UTC (8 years ago) by gpertea
File length: 18795 byte(s)

added gapped alignment extension code