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root/gclib/gclib/GBam.h
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# Line 24 | Line 24
24     char tag[2];
25     uint8_t abuf[512];
26   public:
27 <   GVec<GSeg> exons;
27 >   GVec<GSeg> exons; //coordinates will be 1-based
28     //created from a reader:
29     GBamRecord(bam1_t* from_b=NULL, bam_header_t* b_header=NULL):exons(1) {
30        bam_header=NULL;
# Line 37 | Line 37
37             novel=false;
38             }
39        bam_header=b_header;
40 <      setupCoordinates();//sets start, end coordinate and populates exons array
40 >      setupCoordinates();//set 1-based coordinates (start, end and exons array)
41        }
42  
43     const GBamRecord& operator=(GBamRecord& r) {

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