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root/gclib/gclib/bmsearch.h
Revision: 99
Committed: Thu Oct 6 20:49:17 2011 UTC (8 years, 1 month ago) by gpertea
File size: 372 byte(s)
Log Message:
wip

Line User Rev File contents
1 gpertea 99 #ifdef _BM_SEARCH_
2     #define _BM_SEARCH_
3     class BMSearch {
4     int ASIZE; //=5 : A,C,G,T and N
5     int XSIZE;
6     public:
7     void preBmBc(char *x, int m, int bmBc[]);
8     void suffixes(char *x, int m, int *suff);
9     void preBmGs(char *x, int m, int bmGs[]);
10     void search(char *x, int m, char *y, int n);
11     void tsearch(char *x, int m, char *y, int n); //turbo version
12     }
13    
14     #endif