ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/gclib/bmsearch.h
Revision: 99
Committed: Thu Oct 6 20:49:17 2011 UTC (7 years, 5 months ago) by gpertea
File size: 372 byte(s)
Log Message:
wip

Line File contents
1 #ifdef _BM_SEARCH_
2 #define _BM_SEARCH_
3 class BMSearch {
4 int ASIZE; //=5 : A,C,G,T and N
5 int XSIZE;
6 public:
7 void preBmBc(char *x, int m, int bmBc[]);
8 void suffixes(char *x, int m, int *suff);
9 void preBmGs(char *x, int m, int bmGs[]);
10 void search(char *x, int m, char *y, int n);
11 void tsearch(char *x, int m, char *y, int n); //turbo version
12 }
13
14 #endif