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#include "GBase.h" |
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#include "GArgs.h" |
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#include "GStr.h" |
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|
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#define USAGE "Usage:\n\ |
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gtest [-g|--genomic-fasta <genomic_seqs_fasta>] [-c|COV=<cov%>] \n\ |
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[-s|--seq <seq_info.fsize>] [-o|--out <outfile.gff>] [--disable-flag] [-t|--test <string>]\n\ |
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[-p|PID=<pid%>] file1 [file2 file3 ..]\n\ |
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" |
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enum { |
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OPT_HELP=1, |
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OPT_GENOMIC, |
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OPT_COV, |
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OPT_SEQ, |
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OPT_OUTFILE, |
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OPT_DISABLE_FLAG, |
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OPT_TEST, |
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OPT_PID, |
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}; |
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|
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GArgsDef opts[] = { |
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{"help", 'h', 0, OPT_HELP}, |
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{"genomic-fasta", 'g', 1, OPT_GENOMIC}, |
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{"COV", 'c', 1, OPT_COV}, |
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{"seq", 's', 1, OPT_SEQ}, |
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{"out", 'o', 1, OPT_OUTFILE}, |
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{"disable-flag", 0, 0, OPT_DISABLE_FLAG}, |
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{"test", 't', 1, OPT_TEST}, |
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{"PID", 'p', 1, OPT_PID}, |
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{0,0,0,0} |
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}; |
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|
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int main(int argc, char * const argv[]) { |
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//GArgs args(argc, argv, "hg:c:s:t:o:p:help;genomic-fasta=COV=PID=seq=out=disable-flag;test="); |
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GArgs args(argc, argv, opts); |
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fprintf(stderr, "Command line was:\n"); |
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args.printCmdLine(stderr); |
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args.printError(USAGE, true); |
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//if (args.getOpt('h') || args.getOpt("help")) |
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if (args.getOpt(OPT_HELP)) |
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{ |
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GMessage("%s\n", USAGE); |
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exit(1); |
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} |
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int numopts=args.startOpt(); |
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if (numopts) |
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GMessage("#### Recognized %d option arguments:\n", numopts); |
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int optcode=0; |
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while ((optcode=args.nextCode())) { |
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char* r=args.getOpt(optcode); |
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GMessage("%14s\t= %s\n", args.getOptName(optcode), (r[0]==0)?"True":r); |
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} |
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int numargs=args.startNonOpt(); |
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if (numargs>0) { |
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GMessage("\n#### Found %d non-option arguments given:\n", numargs); |
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char* a=NULL; |
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while ((a=args.nextNonOpt())) { |
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GMessage("%s\n",a); |
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} |
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} |
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} |
