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root/gclib/gffread/gff_utils.cpp
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# Line 203 | Line 203
203     return bigger;
204     }
205   //--- matchAllIntrons==false: intron-chain containment is also considered redundancy
206 < int maxlen=0;
206 > //int maxlen=0;
207   int minlen=0;
208   if (ti.covlen>tj.covlen) {
209        if (tj.exons.Count()>ti.exons.Count()) {
# Line 215 | Line 215
215            bigger=&ti;
216            smaller=&tj;
217            }
218 <      maxlen=ti.covlen;
218 >      //maxlen=ti.covlen;
219        minlen=tj.covlen;
220        }
221     else { //tj has more bases
# Line 228 | Line 228
228            bigger=&tj;
229            smaller=&ti;
230            }
231 <      maxlen=tj.covlen;
231 >      //maxlen=tj.covlen;
232        minlen=ti.covlen;
233        }
234   if (imax==0 && jmax==0) {

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