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root/gclib/gffread/gffread.cpp
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# Line 52 | Line 52
52   \n\
53    -M/--merge : cluster the input transcripts into loci, collapsing matching\n\
54         transcripts (those with the same exact introns and fully contained)\n\
55 +  -d <dupinfo> : for -M option, write collapsing info to file <dupinfo>\n\
56    --cluster-only: same as --merge but without collapsing matching transcripts\n\
57    -K  for -M option: also collapse shorter, fully contained transcripts\n\
58        with fewer introns than the container\n\

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