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root/gclib/gffread/gffread.cpp
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# Line 10 | Line 10
10   #define USAGE "Usage:\n\
11   gffread <input_gff> [-g <genomic_seqs_fasta> | <dir>][-s <seq_info.fsize>] \n\
12   [-o <outfile.gff>] [-t <tname>] [-r [[<strand>]<chr>:]<start>..<end> [-R]]\n\
13 < [-CTVNJMKQAFGUVBHZWTOLE] [-w <exons.fa>] [-x <cds.fa>] [-y <tr_cds.fa>]\n\
13 > [-CTVNJMKQAFGUBHZWTOLE] [-w <exons.fa>] [-x <cds.fa>] [-y <tr_cds.fa>]\n\
14   [-i <maxintron>] \n\
15   Filters and/or converts GFF3/GTF2 records.\n\
16   <input_gff> is a GFF file, use '-' if the GFF records will be given at stdin\n\

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