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gpertea |
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GCLDIR := ../gclib |
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SEARCHDIRS := -I. -I${GCLDIR} |
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SYSTYPE := $(shell uname) |
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MACHTYPE := $(shell uname -m) |
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ifeq ($(MACHTYPE), i686) |
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ARCHFLAGS = -march=i686 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE |
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else |
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ARCHFLAGS = |
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endif |
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CC := g++ |
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BASEFLAGS := -Wall -Wextra ${SEARCHDIRS} $(ARCHFLAGS) \ |
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-D_REENTRANT -fno-strict-aliasing -fno-exceptions -fno-rtti |
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#add the link-time optimization flag if gcc version > 4.5 |
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GCC_VERSION:=$(subst ., ,$(shell gcc -dumpversion)) |
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GCC_MAJOR:=$(word 1,$(GCC_VERSION)) |
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GCC_MINOR:=$(word 2,$(GCC_VERSION)) |
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#GCC_SUB:=$(word 3,$(GCC_VERSION)) |
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GCC_SUB:=x |
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GCC45OPTS := |
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GCC45OPTMAIN := |
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ifeq ($(findstring debug,$(MAKECMDGOALS)),) |
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CFLAGS := -O2 -DNDEBUG $(BASEFLAGS) |
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LDFLAGS := |
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ifeq ($(shell expr $(GCC_MAJOR).$(GCC_MINOR) '>=' 4.5),1) |
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CFLAGS += -flto |
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GCC45OPTS := -flto |
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GCC45OPTMAIN := -fwhole-program |
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endif |
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else |
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CFLAGS := -g -DDEBUG $(BASEFLAGS) |
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LDFLAGS := -g |
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endif |
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%.o : %.cpp |
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${CC} ${CFLAGS} -c $< -o $@ |
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# C/C++ linker |
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LINKER := g++ |
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LIBS := |
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OBJS := ${GCLDIR}/GBase.o ${GCLDIR}/GArgs.o ${GCLDIR}/GFaSeqGet.o \ |
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${GCLDIR}/gdna.o ${GCLDIR}/codons.o ${GCLDIR}/gff.o ${GCLDIR}/GStr.o \ |
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${GCLDIR}/GFastaIndex.o gff_utils.o |
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# ${GCLDIR}/gcdb.o ${GCLDIR}/GCdbYank.o |
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.PHONY : all |
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all: map_report |
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version: ; @echo "GCC Version is: "$(GCC_MAJOR)":"$(GCC_MINOR)":"$(GCC_SUB) |
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@echo "> GCC Opt. string is: "$(GCC45OPTS) |
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debug: map_report |
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$(OBJS) : $(GCLDIR)/GBase.h $(GCLDIR)/gff.h |
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map_report.o : gff_utils.h $(GCLDIR)/GBase.h $(GCLDIR)/gff.h |
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gff_utils.o : gff_utils.h $(GCLDIR)/gff.h |
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${GCLDIR}/gff.o : ${GCLDIR}/gff.h ${GCLDIR}/GFaSeqGet.h ${GCLDIR}/GList.hh ${GCLDIR}/GHash.hh |
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${GCLDIR}/GFaSeqGet.o : ${GCLDIR}/GFaSeqGet.h |
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map_report: $(OBJS) map_report.o |
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${LINKER} ${LDFLAGS} $(GCC45OPTS) $(GCC45OPTMAIN) -o $@ ${filter-out %.a %.so, $^} ${LIBS} |
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# target for removing all object files |
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.PHONY : clean |
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clean:: |
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@${RM} map_report map_report.o* map_report.exe $(OBJS) |
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@${RM} core.* |
