1 |
GCLDIR := ../gclib |
2 |
SEARCHDIRS := -I. -I${GCLDIR} |
3 |
|
4 |
SYSTYPE := $(shell uname) |
5 |
|
6 |
MACHTYPE := $(shell uname -m) |
7 |
ifeq ($(MACHTYPE), i686) |
8 |
ARCHFLAGS = -march=i686 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE |
9 |
|
10 |
else |
11 |
ARCHFLAGS = |
12 |
endif |
13 |
|
14 |
CC := g++ |
15 |
|
16 |
BASEFLAGS := -Wall -Wextra ${SEARCHDIRS} $(ARCHFLAGS) \ |
17 |
-D_REENTRANT -fno-strict-aliasing -fno-exceptions -fno-rtti |
18 |
|
19 |
#add the link-time optimization flag if gcc version > 4.5 |
20 |
GCC_VERSION:=$(subst ., ,$(shell gcc -dumpversion)) |
21 |
GCC_MAJOR:=$(word 1,$(GCC_VERSION)) |
22 |
GCC_MINOR:=$(word 2,$(GCC_VERSION)) |
23 |
#GCC_SUB:=$(word 3,$(GCC_VERSION)) |
24 |
GCC_SUB:=x |
25 |
|
26 |
GCC45OPTS := |
27 |
GCC45OPTMAIN := |
28 |
|
29 |
ifeq ($(findstring debug,$(MAKECMDGOALS)),) |
30 |
CFLAGS := -O2 -DNDEBUG $(BASEFLAGS) |
31 |
LDFLAGS := |
32 |
ifeq ($(shell expr $(GCC_MAJOR).$(GCC_MINOR) '>=' 4.5),1) |
33 |
CFLAGS += -flto |
34 |
GCC45OPTS := -flto |
35 |
GCC45OPTMAIN := -fwhole-program |
36 |
endif |
37 |
else |
38 |
CFLAGS := -g -DDEBUG $(BASEFLAGS) |
39 |
LDFLAGS := -g |
40 |
endif |
41 |
|
42 |
%.o : %.cpp |
43 |
${CC} ${CFLAGS} -c $< -o $@ |
44 |
|
45 |
# C/C++ linker |
46 |
|
47 |
LINKER := g++ |
48 |
LIBS := |
49 |
OBJS := ${GCLDIR}/GBase.o ${GCLDIR}/GArgs.o ${GCLDIR}/GFaSeqGet.o \ |
50 |
${GCLDIR}/gdna.o ${GCLDIR}/codons.o ${GCLDIR}/gff.o ${GCLDIR}/GStr.o \ |
51 |
${GCLDIR}/GFastaIndex.o gff_utils.o |
52 |
# ${GCLDIR}/gcdb.o ${GCLDIR}/GCdbYank.o |
53 |
|
54 |
.PHONY : all |
55 |
all: map_report |
56 |
|
57 |
version: ; @echo "GCC Version is: "$(GCC_MAJOR)":"$(GCC_MINOR)":"$(GCC_SUB) |
58 |
@echo "> GCC Opt. string is: "$(GCC45OPTS) |
59 |
debug: map_report |
60 |
$(OBJS) : $(GCLDIR)/GBase.h $(GCLDIR)/gff.h |
61 |
map_report.o : gff_utils.h $(GCLDIR)/GBase.h $(GCLDIR)/gff.h |
62 |
gff_utils.o : gff_utils.h $(GCLDIR)/gff.h |
63 |
${GCLDIR}/gff.o : ${GCLDIR}/gff.h ${GCLDIR}/GFaSeqGet.h ${GCLDIR}/GList.hh ${GCLDIR}/GHash.hh |
64 |
${GCLDIR}/GFaSeqGet.o : ${GCLDIR}/GFaSeqGet.h |
65 |
map_report: $(OBJS) map_report.o |
66 |
${LINKER} ${LDFLAGS} $(GCC45OPTS) $(GCC45OPTMAIN) -o $@ ${filter-out %.a %.so, $^} ${LIBS} |
67 |
|
68 |
# target for removing all object files |
69 |
|
70 |
.PHONY : clean |
71 |
clean:: |
72 |
@${RM} map_report map_report.o* map_report.exe $(OBJS) |
73 |
@${RM} core.* |