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Revision 95 - (view) (annotate) - [select for diffs]
Modified Wed Oct 5 18:30:51 2011 UTC (7 years, 8 months ago) by gpertea
File length: 3875 byte(s)
Diff to previous 92

Revision 92 - (view) (annotate) - [select for diffs]
Modified Mon Oct 3 21:36:42 2011 UTC (7 years, 8 months ago) by gpertea
File length: 8038 byte(s)
Diff to previous 89
switching to gclib/GAlnExtend

Revision 89 - (view) (annotate) - [select for diffs]
Modified Mon Oct 3 18:42:24 2011 UTC (7 years, 8 months ago) by gpertea
File length: 8035 byte(s)
Diff to previous 86
separate wrappers for 5' and  3' alignments

Revision 86 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 21:38:39 2011 UTC (7 years, 8 months ago) by gpertea
File length: 4851 byte(s)
Diff to previous 85
fixed a few more subtle bugs

Revision 85 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 20:38:13 2011 UTC (7 years, 8 months ago) by gpertea
File length: 4856 byte(s)
Diff to previous 84
rewrote, set params X=8, M=2, N=3

Revision 84 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 03:19:32 2011 UTC (7 years, 8 months ago) by gpertea
File length: 5103 byte(s)
Diff to previous 83
wip bad

Revision 83 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 21:32:42 2011 UTC (7 years, 8 months ago) by gpertea
File length: 4380 byte(s)
Diff to previous 82
wip

Revision 82 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 20:46:39 2011 UTC (7 years, 8 months ago) by gpertea
File length: 4360 byte(s)
Diff to previous 81
wip

Revision 81 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 19:02:24 2011 UTC (7 years, 8 months ago) by gpertea
File length: 4357 byte(s)
Diff to previous 80
fixes, still a bug with flast_d[d] = flast_d[d] - flower + 2;

Revision 80 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 21:12:17 2011 UTC (7 years, 8 months ago) by gpertea
File length: 4208 byte(s)
Diff to previous 79
wip

Revision 79 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 19:54:42 2011 UTC (7 years, 8 months ago) by gpertea
File length: 3615 byte(s)
Diff to previous 78
wip, fixed memory leaks

Revision 78 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 03:20:10 2011 UTC (7 years, 8 months ago) by gpertea
File length: 3597 byte(s)
Diff to previous 75
3' match seems to work, needs a few refinements

Revision 75 - (view) (annotate) - [select for diffs]
Modified Tue Sep 27 02:24:57 2011 UTC (7 years, 8 months ago) by gpertea
File length: 2624 byte(s)
Diff to previous 74
implementing GreedyAlign for best rseeds etc.

Revision 74 - (view) (annotate) - [select for diffs]
Added Tue Sep 27 01:22:37 2011 UTC (7 years, 8 months ago) by gpertea
File length: 2264 byte(s)
added seqalign files

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