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root/gclib/tophat_cpp
r139
File Last Change
 ../
SeqAn-1.2/ 30 (7 years ago) by gpertea: added SeqAn to tophat source pack
GArgs.cpp 29 (7 years ago) by gpertea: adding tophat source work
GArgs.h 29 (7 years ago) by gpertea: adding tophat source work
GBase.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
GBase.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
GFaSeqGet.cpp 29 (7 years ago) by gpertea: adding tophat source work
GFaSeqGet.h 29 (7 years ago) by gpertea: adding tophat source work
GFastaIndex.cpp 29 (7 years ago) by gpertea: adding tophat source work
GFastaIndex.h 29 (7 years ago) by gpertea: adding tophat source work
GHash.hh 29 (7 years ago) by gpertea: adding tophat source work
GList.hh 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
GStr.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
GStr.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
Makefile 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
align_status.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
align_status.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
alphabet.h 29 (7 years ago) by gpertea: adding tophat source work
assert_helpers.h 29 (7 years ago) by gpertea: adding tophat source work
bam2fastx.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
bam_dump.cpp 29 (7 years ago) by gpertea: adding tophat source work
bam_merge.cpp 29 (7 years ago) by gpertea: adding tophat source work
bed_to_juncs.py 29 (7 years ago) by gpertea: adding tophat source work
bwt2sam.cpp 29 (7 years ago) by gpertea: adding tophat source work
bwt_map.cpp 139 (7 years ago) by gpertea: spliceCigar() implemented, needs testing
bwt_map.h 137 (7 years ago) by gpertea: wip spliceCigar() in bwt_map.cpp needs testing
closures.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
closures.h 29 (7 years ago) by gpertea: adding tophat source work
codons.cpp 29 (7 years ago) by gpertea: adding tophat source work
codons.h 29 (7 years ago) by gpertea: adding tophat source work
common.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
common.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
config.h 29 (7 years ago) by gpertea: adding tophat source work
contig_to_chr_coords.py 29 (7 years ago) by gpertea: adding tophat source work
deletions.cpp 29 (7 years ago) by gpertea: adding tophat source work
deletions.h 29 (7 years ago) by gpertea: adding tophat source work
extract_reads.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
fix_map_ordering.cpp 34 (7 years ago) by gpertea: wip segment_juncs
fragments.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
fragments.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
gdna.cpp 29 (7 years ago) by gpertea: adding tophat source work
gdna.h 29 (7 years ago) by gpertea: adding tophat source work
gff.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
gff.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
gtf_juncs.cpp 29 (7 years ago) by gpertea: adding tophat source work
insertions.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
insertions.h 29 (7 years ago) by gpertea: adding tophat source work
inserts.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
inserts.h 29 (7 years ago) by gpertea: adding tophat source work
juncs_db.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
junctions.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
junctions.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
library_stats.cpp 29 (7 years ago) by gpertea: adding tophat source work
long_spanning_reads.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
mask_sam.cpp 29 (7 years ago) by gpertea: adding tophat source work
prep_reads.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
qual.cpp 29 (7 years ago) by gpertea: adding tophat source work
qual.h 29 (7 years ago) by gpertea: adding tophat source work
reads.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
reads.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
sam2bam.cpp 29 (7 years ago) by gpertea: adding tophat source work
sam_juncs.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
segment_juncs.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
segments.h 29 (7 years ago) by gpertea: adding tophat source work
sra_to_solid.py 29 (7 years ago) by gpertea: adding tophat source work
timer.h 29 (7 years ago) by gpertea: adding tophat source work
tokenize.cpp 29 (7 years ago) by gpertea: adding tophat source work
tokenize.h 29 (7 years ago) by gpertea: adding tophat source work
tophat 137 (7 years ago) by gpertea: wip spliceCigar() in bwt_map.cpp needs testing
tophat.py 29 (7 years ago) by gpertea: adding tophat source work
tophat_reports.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
wiggles.cpp 29 (7 years ago) by gpertea: adding tophat source work
wiggles.h 29 (7 years ago) by gpertea: adding tophat source work
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