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root/gclib/tophat_cpp
r179
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SeqAn-1.2/ 30 (8 years ago) by gpertea: added SeqAn to tophat source pack
FastaTools.cpp 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
FastaTools.h 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
GArgs.cpp 29 (8 years ago) by gpertea: adding tophat source work
GArgs.h 29 (8 years ago) by gpertea: adding tophat source work
GBase.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
GBase.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
GFaSeqGet.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
GFaSeqGet.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
GFastaIndex.cpp 29 (8 years ago) by gpertea: adding tophat source work
GFastaIndex.h 29 (8 years ago) by gpertea: adding tophat source work
GHash.hh 29 (8 years ago) by gpertea: adding tophat source work
GList.hh 154 (7 years ago) by gpertea: massive update with Daehwan's work
GStr.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
GStr.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
GTFToFasta.cpp 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
GTFToFasta.h 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
Makefile 167 (7 years ago) by gpertea: bam_merge needs fixing!
align_status.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
align_status.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
alphabet.h 29 (8 years ago) by gpertea: adding tophat source work
assert_helpers.h 29 (8 years ago) by gpertea: adding tophat source work
bam2fastx.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
bam_dump.cpp 29 (8 years ago) by gpertea: adding tophat source work
bam_merge.cpp 168 (7 years ago) by gpertea: finally fixed bam_merge
bed_to_juncs.py 29 (8 years ago) by gpertea: adding tophat source work
bwt2sam.cpp 29 (8 years ago) by gpertea: adding tophat source work
bwt_map.cpp 169 (7 years ago) by gpertea: sync
bwt_map.h 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
closures.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
closures.h 29 (8 years ago) by gpertea: adding tophat source work
codons.cpp 29 (8 years ago) by gpertea: adding tophat source work
codons.h 29 (8 years ago) by gpertea: adding tophat source work
common.cpp 168 (7 years ago) by gpertea: finally fixed bam_merge
common.h 168 (7 years ago) by gpertea: finally fixed bam_merge
config.h 29 (8 years ago) by gpertea: adding tophat source work
contig_to_chr_coords.py 29 (8 years ago) by gpertea: adding tophat source work
deletions.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
deletions.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
extract_reads.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
fix_map_ordering.cpp 167 (7 years ago) by gpertea: bam_merge needs fixing!
fragments.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
fragments.h 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
fusions.cpp 166 (7 years ago) by gpertea: resync
fusions.h 166 (7 years ago) by gpertea: resync
gdna.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
gdna.h 29 (8 years ago) by gpertea: adding tophat source work
gff.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
gff.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
gtf_juncs.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
insertions.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
insertions.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
inserts.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
inserts.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
juncs_db.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
junctions.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
junctions.h 154 (7 years ago) by gpertea: massive update with Daehwan's work
library_stats.cpp 29 (8 years ago) by gpertea: adding tophat source work
long_spanning_reads.cpp 159 (7 years ago) by gpertea: wip
map2gtf.cpp 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
map2gtf.h 165 (7 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
mask_sam.cpp 29 (8 years ago) by gpertea: adding tophat source work
prep_reads.cpp 154 (7 years ago) by gpertea: massive update with Daehwan's work
qual.cpp 29 (8 years ago) by gpertea: adding tophat source work
qual.h 29 (8 years ago) by gpertea: adding tophat source work
reads.cpp 163 (7 years ago) by gpertea: wip
reads.h 159 (7 years ago) by gpertea: wip
sam2bam.cpp 29 (8 years ago) by gpertea: adding tophat source work
sam_juncs.cpp 135 (7 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
segment_juncs.cpp 159 (7 years ago) by gpertea: wip
segments.h 29 (8 years ago) by gpertea: adding tophat source work
sra_to_solid.py 29 (8 years ago) by gpertea: adding tophat source work
timer.h 29 (8 years ago) by gpertea: adding tophat source work
tokenize.cpp 29 (8 years ago) by gpertea: adding tophat source work
tokenize.h 29 (8 years ago) by gpertea: adding tophat source work
tophat 167 (7 years ago) by gpertea: bam_merge needs fixing!
tophat.py 29 (8 years ago) by gpertea: adding tophat source work
tophat_reports.cpp 166 (7 years ago) by gpertea: resync
utils.cpp 158 (7 years ago) by gpertea:
utils.h 158 (7 years ago) by gpertea:
wiggles.cpp 29 (8 years ago) by gpertea: adding tophat source work
wiggles.h 29 (8 years ago) by gpertea: adding tophat source work
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