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Revision 169 - Directory Listing
Modified Fri Feb 10 18:56:56 2012 UTC (7 years, 2 months ago) by gpertea
sync

Revision 168 - Directory Listing
Modified Fri Feb 10 16:40:38 2012 UTC (7 years, 2 months ago) by gpertea
finally fixed bam_merge

Revision 167 - Directory Listing
Modified Fri Feb 10 05:51:56 2012 UTC (7 years, 2 months ago) by gpertea
bam_merge needs fixing!

Revision 166 - Directory Listing
Modified Fri Feb 10 02:45:06 2012 UTC (7 years, 2 months ago) by gpertea
resync

Revision 165 - Directory Listing
Modified Fri Feb 10 01:04:05 2012 UTC (7 years, 2 months ago) by gpertea
sync back with Daehwan. Test bam_merge for memory leaks!

Revision 164 - Directory Listing
Modified Thu Feb 9 05:30:41 2012 UTC (7 years, 2 months ago) by gpertea
wip

Revision 163 - Directory Listing
Modified Thu Feb 9 03:31:49 2012 UTC (7 years, 2 months ago) by gpertea
wip

Revision 159 - Directory Listing
Modified Mon Jan 30 22:38:08 2012 UTC (7 years, 2 months ago) by gpertea
wip

Revision 158 - Directory Listing
Modified Sun Jan 29 19:42:10 2012 UTC (7 years, 2 months ago) by gpertea

Revision 157 - Directory Listing
Modified Fri Jan 27 22:33:06 2012 UTC (7 years, 2 months ago) by gpertea
added index writing to GBamWriter

Revision 154 - Directory Listing
Modified Tue Jan 24 02:29:21 2012 UTC (7 years, 3 months ago) by gpertea
massive update with Daehwan's work

Revision 140 - Directory Listing
Modified Thu Dec 15 22:40:48 2011 UTC (7 years, 4 months ago) by gpertea

Revision 139 - Directory Listing
Modified Thu Dec 15 22:36:13 2011 UTC (7 years, 4 months ago) by gpertea
spliceCigar() implemented, needs testing

Revision 138 - Directory Listing
Modified Wed Dec 14 22:58:39 2011 UTC (7 years, 4 months ago) by gpertea

Revision 137 - Directory Listing
Modified Wed Dec 14 22:58:22 2011 UTC (7 years, 4 months ago) by gpertea
wip spliceCigar() in bwt_map.cpp needs testing

Revision 135 - Directory Listing
Modified Mon Dec 12 22:28:38 2011 UTC (7 years, 4 months ago) by gpertea
wip - SplicedSAMHitFactory() still not implemented

Revision 111 - Directory Listing
Modified Tue Oct 25 17:05:09 2011 UTC (7 years, 6 months ago) by gpertea
wip

Revision 97 - Directory Listing
Modified Thu Oct 6 19:45:36 2011 UTC (7 years, 6 months ago) by gpertea
by default bam2fastx shows unmapped only

Revision 70 - Directory Listing
Modified Tue Sep 20 19:32:58 2011 UTC (7 years, 7 months ago) by gpertea
wip : spliceCigar()

Revision 69 - Directory Listing
Modified Mon Sep 19 21:00:41 2011 UTC (7 years, 7 months ago) by gpertea
wip - implementing SplicedSAMHitFactory::get_hit_from_buf()

Revision 68 - Directory Listing
Modified Mon Sep 19 20:09:26 2011 UTC (7 years, 7 months ago) by gpertea
first attempt at accepting different Color qvlen in prep_reads

Revision 67 - Directory Listing
Modified Mon Sep 19 19:39:49 2011 UTC (7 years, 7 months ago) by gpertea
fixed segment_juncs to work with .bam files

Revision 37 - Directory Listing
Modified Mon Aug 22 16:17:34 2011 UTC (7 years, 8 months ago) by gpertea
wip

Revision 35 - Directory Listing
Modified Fri Aug 5 18:47:20 2011 UTC (7 years, 8 months ago) by gpertea
wip

Revision 34 - Directory Listing
Modified Wed Aug 3 22:15:52 2011 UTC (7 years, 8 months ago) by gpertea
wip segment_juncs

Revision 33 - Directory Listing
Modified Wed Aug 3 17:02:56 2011 UTC (7 years, 8 months ago) by gpertea
wip conversion to SAM processing

Revision 32 - Directory Listing
Modified Tue Aug 2 22:04:47 2011 UTC (7 years, 8 months ago) by gpertea
adding bam2fastx as recognized unpacker for .bam files

Revision 31 - Directory Listing
Modified Tue Aug 2 21:58:18 2011 UTC (7 years, 8 months ago) by gpertea
trying to get rid of unspliced_bwt in Maps (replace by unspliced_sam)

Revision 30 - Directory Listing
Modified Tue Aug 2 21:25:50 2011 UTC (7 years, 8 months ago) by gpertea
added SeqAn to tophat source pack

Revision 29 - Directory Listing
Modified Tue Aug 2 21:24:54 2011 UTC (7 years, 8 months ago) by gpertea
adding tophat source work

Revision 28 - Directory Listing
Added Tue Aug 2 21:23:26 2011 UTC (7 years, 8 months ago) by gpertea
adding tophat_cpp dir