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root/gclib/tophat_cpp/bwt_map.h
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# Line 34 | Line 34
34   struct CigarOp
35   {
36          CigarOp(CigarOpCode o, uint32_t l) : opcode(o), length(l) {}
37 <        CigarOpCode opcode : 3;
38 <        uint32_t length : 29;
37 >        CigarOpCode opcode:4;
38 >        uint32_t length:28;
39          
40          bool operator==(const CigarOp& rhs) const
41          {
# Line 884 | Line 884
884                        break;
885                        }
886                    } //hit parsed
887 <            } //while reading hits
887 >          } //while reading hits
888            
889            return (!hits_for_read.hits.empty() && hits_for_read.insert_id != 0);
890          }

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