ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/tophat_cpp/fusions.h
(Generate patch)
# Line 229 | Line 229
229   void unsupport_fusions(const BowtieHit& bh, FusionSet& fusions, FusionSet& fusions_ref);
230   void print_fusions(FILE* fusions_out, FusionSet& fusions, RefSequenceTable& ref_sequences);
231   void fusions_from_spliced_hit(const BowtieHit& bh, vector<Fusion>& fusions, bool auto_sort = true);
232 < void pair_support(const HitsForRead& left_hits, const HitsForRead& right_hits, FusionSet& fusions, FusionSet& fusions_ref);
232 > void pair_support(const vector<pair<BowtieHit, BowtieHit> >& best_hits, FusionSet& fusions, FusionSet& fusions_ref);
233  
234   void merge_with(FusionSimpleSet& fusions, const FusionSimpleSet& other_fusions);
235   void merge_with(FusionSet& fusions, const FusionSet& other_fusions);

Diff Legend

Removed lines
+ Added lines
< Changed lines
> Changed lines