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root/gclib/tophat_cpp/segment_juncs.cpp
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# Line 3495 | Line 3495
3495    // many false splice junctions.
3496    if (bowtie2)
3497      {
3498      const size_t max_seg_hits = max_multihits * 2;
3498        for (size_t s = 0; s < hits_for_read.size(); ++s)
3499          {
3500 <          if (hits_for_read[s].hits.size() > max_seg_hits)
3500 >          if (hits_for_read[s].hits.size() > max_seg_multihits)
3501              return;
3502          }
3503      }

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