ViewVC Help
| View Changeset | Root Listing
root/gclib
Jump to revision: Previous Next
Author: gpertea
Date: Tue Aug 2 21:24:54 2011 UTC (7 years, 11 months ago)
Log Message:
adding tophat source work

Changed paths

Path Details
Directorytophat_cpp/GArgs.cpp added
Directorytophat_cpp/GArgs.h added
Directorytophat_cpp/GBase.cpp added
Directorytophat_cpp/GBase.h added
Directorytophat_cpp/GFaSeqGet.cpp added
Directorytophat_cpp/GFaSeqGet.h added
Directorytophat_cpp/GFastaIndex.cpp added
Directorytophat_cpp/GFastaIndex.h added
Directorytophat_cpp/GHash.hh added
Directorytophat_cpp/GList.hh added
Directorytophat_cpp/GStr.cpp added
Directorytophat_cpp/GStr.h added
Directorytophat_cpp/Makefile added
Directorytophat_cpp/align_status.cpp added
Directorytophat_cpp/align_status.h added
Directorytophat_cpp/alphabet.h added
Directorytophat_cpp/assert_helpers.h added
Directorytophat_cpp/bam2fastx.cpp added
Directorytophat_cpp/bam_dump.cpp added
Directorytophat_cpp/bam_merge.cpp added
Directorytophat_cpp/bed_to_juncs.py added
Directorytophat_cpp/bwt2sam.cpp added
Directorytophat_cpp/bwt_map.cpp added
Directorytophat_cpp/bwt_map.h added
Directorytophat_cpp/closures.cpp added
Directorytophat_cpp/closures.h added
Directorytophat_cpp/codons.cpp added
Directorytophat_cpp/codons.h added
Directorytophat_cpp/common.cpp added
Directorytophat_cpp/common.h added
Directorytophat_cpp/config.h added
Directorytophat_cpp/contig_to_chr_coords.py added
Directorytophat_cpp/deletions.cpp added
Directorytophat_cpp/deletions.h added
Directorytophat_cpp/extract_reads.cpp added
Directorytophat_cpp/fix_map_ordering.cpp added
Directorytophat_cpp/fragments.cpp added
Directorytophat_cpp/fragments.h added
Directorytophat_cpp/gdna.cpp added
Directorytophat_cpp/gdna.h added
Directorytophat_cpp/gff.cpp added
Directorytophat_cpp/gff.h added
Directorytophat_cpp/gtf_juncs.cpp added
Directorytophat_cpp/insertions.cpp added
Directorytophat_cpp/insertions.h added
Directorytophat_cpp/inserts.cpp added
Directorytophat_cpp/inserts.h added
Directorytophat_cpp/juncs_db.cpp added
Directorytophat_cpp/junctions.cpp added
Directorytophat_cpp/junctions.h added
Directorytophat_cpp/library_stats.cpp added
Directorytophat_cpp/long_spanning_reads.cpp added
Directorytophat_cpp/mask_sam.cpp added
Directorytophat_cpp/prep_reads.cpp added
Directorytophat_cpp/qual.cpp added
Directorytophat_cpp/qual.h added
Directorytophat_cpp/reads.cpp added
Directorytophat_cpp/reads.h added
Directorytophat_cpp/sam2bam.cpp added
Directorytophat_cpp/sam_juncs.cpp added
Directorytophat_cpp/segment_juncs.cpp added
Directorytophat_cpp/segments.h added
Directorytophat_cpp/sra_to_solid.py added
Directorytophat_cpp/timer.h added
Directorytophat_cpp/tokenize.cpp added
Directorytophat_cpp/tokenize.h added
Directorytophat_cpp/tophat added
Directorytophat_cpp/tophat.py added
Directorytophat_cpp/tophat_reports.cpp added
Directorytophat_cpp/wiggles.cpp added
Directorytophat_cpp/wiggles.h added