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Author: gpertea
Date: Tue Aug 2 21:25:50 2011 UTC (8 years, 2 months ago)
Log Message:
added SeqAn to tophat source pack

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Directorytophat_cpp/SeqAn-1.2/ added
Directorytophat_cpp/SeqAn-1.2/COPYING added
Directorytophat_cpp/SeqAn-1.2/COPYING.LESSER added
Directorytophat_cpp/SeqAn-1.2/README added
Directorytophat_cpp/SeqAn-1.2/seqan/ added
Directorytophat_cpp/SeqAn-1.2/seqan/align/ added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_algorithms.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_cols_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_dynprog.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_generated_forwards.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_hirschberg.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_iterator_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_local_dynprog.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_myers.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/align_trace.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/gaps_array.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/gaps_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/gaps_iterator_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/gaps_simple.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/gaps_sumlist.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/hirschberg_set.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align/matrix_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/align.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/ added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_aggregates.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_allocator_chunkpool.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_allocator_interface.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_allocator_multipool.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_allocator_simple.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_allocator_singlepool.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_allocator_to_std.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_alphabet_interface.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_alphabet_interface2.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_alphabet_simple.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_alphabet_simple_tabs.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_alphabet_trait_basic.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_compare.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_converter.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_counted_ptr.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_debug.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_definition.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_forwards.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_generated_forwards.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_holder.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_holder_dynamic.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_host.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_iterator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_iterator_adapt_std.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_iterator_adaptor.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_iterator_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_iterator_position.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_iterator_simple.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_logvalue.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_metaprogramming.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_operator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_pointer.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_profchar.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_profile.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_proxy.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_sse2.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_tag.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_transport.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_type.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic/basic_volatile_ptr.h added
Directorytophat_cpp/SeqAn-1.2/seqan/basic.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/ added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_generated_forwards.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_hit.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_hit_iterator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_hsp.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_hsp_iterator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_iterator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_parsing.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_report.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_run.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_stream_hit.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_stream_hit_iterator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_stream_hsp_iterator.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast/blast_stream_report.h added
Directorytophat_cpp/SeqAn-1.2/seqan/blast.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/ added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/chain_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/chain_generic.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/chain_meta_fragment.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/chain_point.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/chain_wrapper_point.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/chaining_generated_forwards.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/fragment.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/geom_distribution.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/range_max_tree.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/range_tree.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rmt_base.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rmt_common_algos.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rmt_compl_algos.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rmt_def_algos.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rmt_skip_base_element.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rmt_skip_element.h added
Directorytophat_cpp/SeqAn-1.2/seqan/chaining/rt_base.h added