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Author:
gpertea
Date:
Tue Aug 2 21:25:50 2011 UTC
(8 years, 2 months ago)
Log Message:
added SeqAn to tophat source pack
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tophat_cpp/SeqAn1.2/
added
tophat_cpp/SeqAn1.2/COPYING
added
tophat_cpp/SeqAn1.2/COPYING.LESSER
added
tophat_cpp/SeqAn1.2/README
added
tophat_cpp/SeqAn1.2/seqan/
added
tophat_cpp/SeqAn1.2/seqan/align/
added
tophat_cpp/SeqAn1.2/seqan/align/align_algorithms.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_base.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_cols_base.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_dynprog.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_generated_forwards.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_hirschberg.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_iterator_base.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_local_dynprog.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_myers.h
added
tophat_cpp/SeqAn1.2/seqan/align/align_trace.h
added
tophat_cpp/SeqAn1.2/seqan/align/gaps_array.h
added
tophat_cpp/SeqAn1.2/seqan/align/gaps_base.h
added
tophat_cpp/SeqAn1.2/seqan/align/gaps_iterator_base.h
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tophat_cpp/SeqAn1.2/seqan/align/gaps_simple.h
added
tophat_cpp/SeqAn1.2/seqan/align/gaps_sumlist.h
added
tophat_cpp/SeqAn1.2/seqan/align/hirschberg_set.h
added
tophat_cpp/SeqAn1.2/seqan/align/matrix_base.h
added
tophat_cpp/SeqAn1.2/seqan/align.h
added
tophat_cpp/SeqAn1.2/seqan/basic/
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tophat_cpp/SeqAn1.2/seqan/basic/basic_aggregates.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_allocator_chunkpool.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_allocator_interface.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_allocator_multipool.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_allocator_simple.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_allocator_singlepool.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_allocator_to_std.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_alphabet_interface.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_alphabet_interface2.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_alphabet_simple.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_alphabet_simple_tabs.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_alphabet_trait_basic.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_compare.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_converter.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_counted_ptr.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_debug.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_definition.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_forwards.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_generated_forwards.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_holder.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_holder_dynamic.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_host.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_iterator.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_iterator_adapt_std.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_iterator_adaptor.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_iterator_base.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_iterator_position.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_iterator_simple.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_logvalue.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_metaprogramming.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_operator.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_pointer.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_profchar.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_profile.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_proxy.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_sse2.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_tag.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_transport.h
added
tophat_cpp/SeqAn1.2/seqan/basic/basic_type.h
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tophat_cpp/SeqAn1.2/seqan/basic/basic_volatile_ptr.h
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tophat_cpp/SeqAn1.2/seqan/basic.h
added
tophat_cpp/SeqAn1.2/seqan/blast/
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_base.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_generated_forwards.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_hit.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_hit_iterator.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_hsp.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_hsp_iterator.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_iterator.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_parsing.h
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tophat_cpp/SeqAn1.2/seqan/blast/blast_report.h
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tophat_cpp/SeqAn1.2/seqan/blast/blast_run.h
added
tophat_cpp/SeqAn1.2/seqan/blast/blast_stream_hit.h
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tophat_cpp/SeqAn1.2/seqan/blast/blast_stream_hit_iterator.h
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tophat_cpp/SeqAn1.2/seqan/blast/blast_stream_hsp_iterator.h
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tophat_cpp/SeqAn1.2/seqan/blast/blast_stream_report.h
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tophat_cpp/SeqAn1.2/seqan/blast.h
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tophat_cpp/SeqAn1.2/seqan/chaining/
added
tophat_cpp/SeqAn1.2/seqan/chaining/chain_base.h
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tophat_cpp/SeqAn1.2/seqan/chaining/chain_generic.h
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tophat_cpp/SeqAn1.2/seqan/chaining/chain_meta_fragment.h
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tophat_cpp/SeqAn1.2/seqan/chaining/chain_point.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/chain_wrapper_point.h
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tophat_cpp/SeqAn1.2/seqan/chaining/chaining_generated_forwards.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/fragment.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/geom_distribution.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/range_max_tree.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/range_tree.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rmt_base.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rmt_common_algos.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rmt_compl_algos.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rmt_def_algos.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rmt_skip_base_element.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rmt_skip_element.h
added
tophat_cpp/SeqAn1.2/seqan/chaining/rt_base.h
added