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Revision 16 - Directory Listing
Modified Mon Apr 30 04:10:18 2012 UTC (4 years, 7 months ago) by wynand
Failure to read biopt file with no metabolite section corrected.
Corrected names exported to SBML to give escape codes for &, " and '
Named, one sided reaction now read correctly from biopt.
Minor improvements to window displays etc.
Revision 15 - Directory Listing
Modified Fri Dec 2 01:05:27 2011 UTC (5 years ago) by wynand
Correction to bug introduced  in rev 13 (!)
Revision 14 - Directory Listing
Modified Thu Dec 1 22:58:34 2011 UTC (5 years ago) by wynand
Corrected omission of one-sided reactions in Bioopt input files.
Revision 13 - Directory Listing
Modified Wed Nov 30 22:48:54 2011 UTC (5 years ago) by wynand
Suffix -RXN added to reaction IDs that duplicate metabolite IDs.
Flux units read from BioOpt properly implemented in SBML specs.
Various fixes to satisfy online SBML validation.
Revision 12 - Directory Listing
Modified Tue Nov 29 03:01:51 2011 UTC (5 years ago) by wynand
Added a reader for BioOpt text input file format.
Incorporates extensions to the bioopt spec to facilitate spreadsheet models.
Extracts compartment suffixes from metabolite IDs.
Revision 11 - Directory Listing
Modified Fri Sep 9 03:22:20 2011 UTC (5 years, 3 months ago) by wynand
Network nodes shown as rectangles for metabolites and ellipses for reactions, sizes adjusted by slider controls. 
Subnet nodes on metanet coloured according to cellular compartment.
Options for centred and 3D network layouts.

Revision 10 - Directory Listing
Modified Mon Aug 8 20:44:18 2011 UTC (5 years, 4 months ago) by wynand
Can now parse Regular Expression input from external and target metabolite files.
Added sound effects when user input is needed.
Button added to automate progression through externals selection rounds.

Revision 9 - Directory Listing
Modified Thu Jul 28 01:11:31 2011 UTC (5 years, 4 months ago) by wynand
Improved SBML input and output; should now cope with any file at SBML Version 2 Level 4 and pass all specs through to subnets.
Reads reaction directions from FLUX and BOUNDS parameters in SBML files, and displays model notes as well.
Revision 8 - Directory Listing
Modified Tue Jul 19 19:44:41 2011 UTC (5 years, 4 months ago) by wynand
Working directory specified in NetSplitter.m
Error check for inconsistency between metabolite list and reaction specs in SBML input files
Automatic correction of metabolite and reaction IDs to conform to SBML rules
Revision 7 - Directory Listing
Modified Thu Jun 16 00:46:14 2011 UTC (5 years, 5 months ago) by wynand
DAG matrix display in Merge dialogue moved to a separate tab.
Added compartment selector and improved layout of merge controls
Starting directory for primary input file now initialised in NetSplitter.m.
Secondary input file paths adapt to primary file path.

Revision 6 - Directory Listing
Modified Wed Jun 8 23:53:46 2011 UTC (5 years, 6 months ago) by wynand
Predominant cellular compartment shown in block listings.
Matrix display shows horizontal background bands, colour shaded to indicate compartment for each block.
Revision 5 - Directory Listing
Modified Mon Feb 21 23:32:44 2011 UTC (5 years, 9 months ago) by wynand
No externals flavonoid demo file.
Revision 4 - Directory Listing
Modified Mon Feb 21 23:26:04 2011 UTC (5 years, 9 months ago) by wynand
Metabolite ID's longer than 50 chars now accomodated.
Consistently use Matrixplot in selection display to avoid occcasional misalignment caused by mixing MatrixPlot and ArrayPlot
Improved handling of SBML files: consistent use of model id/name in file naming;.XML accepted; full reaction specification transmitted to subnets, including kinetic and unit specifications.
Revision 3 - Directory Listing
Modified Tue Feb 8 01:05:13 2011 UTC (5 years, 10 months ago) by wynand
Fixed BinCounts bug that prevented mouseclick selection of blocks after first merge round.
Improved merge history dialog interaction.
Improved robustness of Blockfinder.
Revision 2 - Directory Listing
Modified Sun Dec 12 21:32:01 2010 UTC (5 years, 11 months ago) by wynand
Saves blocking rows and columns for post-mortem null space analysis.
Revision 1 - Directory Listing
Added Fri Dec 10 03:13:58 2010 UTC (6 years ago) by wynand
Initial import