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r21
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SPRdataclass.py 1 (9 years ago) by clausted: Initial import of Osprai project
modelclass1.py 1 (9 years ago) by clausted: Initial import of Osprai project
curvefitting.py 1 (9 years ago) by clausted: Initial import of Osprai project
Copying.txt 1 (9 years ago) by clausted: Initial import of Osprai project
License.txt 1 (9 years ago) by clausted: Initial import of Osprai project
converter-manual.html 2 (9 years ago) by clausted: Initial check-in of the html manual for converter.py.
example-clamp.txt 4 (9 years ago) by clausted: Example input data files for testing purposes.
example-zkey.tsv 4 (9 years ago) by clausted: Example input data files for testing purposes.
example-z03-cal.txt 4 (9 years ago) by clausted: Example input data files for testing purposes.
converter.py 6 (9 years ago) by clausted: Added CONSTANTS to represent data file type identification integers. These should be used throughout the code in the future to make it more readable. Also added some default injection data to make it possible to convert a SPRit file to a CLAMP file without having an Analyte/injection file. Also note a changed dictionary key IDcal->ID in one instance. --CGL
example-icm.txt 8 (9 years ago) by clausted: Add four example SPR data files to help in testing code. --CGL
example-key.tsv 8 (9 years ago) by clausted: Add four example SPR data files to help in testing code. --CGL
example-sprit.txt 8 (9 years ago) by clausted: Add four example SPR data files to help in testing code. --CGL
example-clamp2.txt 8 (9 years ago) by clausted: Add four example SPR data files to help in testing code. --CGL
example-biosensor.txt 10 (9 years ago) by clausted: Add example-biosensor.txt as a convenience for testing.
io_module.py 14 (9 years ago) by clausted: Added features to select time points for measuring binding responses and to output that data to a file or scatterplot. Added the background subtraction feature to cal_module. Also a few bug fixes. --CGL
cal_module.py 15 (9 years ago) by clausted: Bug fix.
vu_module.py 16 (9 years ago) by clausted: Fix bug in "Next" button script.
ba_class.py 17 (9 years ago) by clausted: Start work on curve fitting. Added two properties, model and params, to ba.roi in ba_class. Add mdl_module which will hold functions that model SPR interactions.
mdl_module.py 20 (8 years ago) by clausted: Added clma(), a constrained LMA fitting function. We can now set a lower and upper bound for fitting. Be sure that the initial estimate is between, not at, the bounds. It transforms the parameters using x1 = ((b-a)*tanh(x0)+b+a)/2 for the interval (a,b).
test.py 20 (8 years ago) by clausted: Added clma(), a constrained LMA fitting function. We can now set a lower and upper bound for fitting. Be sure that the initial estimate is between, not at, the bounds. It transforms the parameters using x1 = ((b-a)*tanh(x0)+b+a)/2 for the interval (a,b).
fit_module.py 20 (8 years ago) by clausted: Added clma(), a constrained LMA fitting function. We can now set a lower and upper bound for fitting. Be sure that the initial estimate is between, not at, the bounds. It transforms the parameters using x1 = ((b-a)*tanh(x0)+b+a)/2 for the interval (a,b).
osprai_one.py 21 (8 years ago) by clausted: The new module osprai_one provides access to the important functions in all of the other modules. Documentation has been started with osprai_one.html.
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