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r67
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help/ 40 (8 years ago) by clausted: Move two html documentation files into /help subdirectory.
models2010/ 41 (8 years ago) by clausted: Moved old data class "SPRdataclass" and accompanying surface interaction model modules to /models2010 subdirectory. The plan is to implement these models for use with the "ba_class" and the modules in the parent directory. Should all the models be added to mdl_module or should they each go in their own module? I am undecided.
exampledata/ 57 (8 years ago) by clausted: We are starting to implement automatic code testing using doctest. The example code in the main docstring of cal_module was modified for compliance.
sphinx/ 64 (8 years ago) by clausted: More doctests in docstrings.
Copying.txt 1 (9 years ago) by clausted: Initial import of Osprai project
License.txt 1 (9 years ago) by clausted: Initial import of Osprai project
cal_module.py 59 (8 years ago) by clausted: Work on doctest material for ba_class and cal_module. Now ba_class has built-in 1:1 interaction model simulator. This is used for testing functions and methods in this and other modules. Also change bgset() function so zero refers to first ROI. This is necessary for consistency--but old user scripts might need updating.
test.py 65 (8 years ago) by clausted: Added much testing to all modules using docstrings and doctest. To help this, I also added two optional parameters to mclma(), verbose and maxiter. For example, use "mclma(rois, verbose=False, maxiter=99)" to run the regression up to 99 iterations without echoing progress to the standard output.
fit_module.py 65 (8 years ago) by clausted: Added much testing to all modules using docstrings and doctest. To help this, I also added two optional parameters to mclma(), verbose and maxiter. For example, use "mclma(rois, verbose=False, maxiter=99)" to run the regression up to 99 iterations without echoing progress to the standard output.
ba_class.py 66 (7 years ago) by clausted: Add methods BiosensorArray.save(filename) and .load(filename) which save serialized data files with the sba extension.
osprai_one.py 66 (7 years ago) by clausted: Add methods BiosensorArray.save(filename) and .load(filename) which save serialized data files with the sba extension.
io_module.py 67 (7 years ago) by clausted: Fix bug in numbering ROIs in io_module.readicmtext(). Enhance vu_module.dualgraph() to automatically show modeled data along with read data. Increase running average length in mdl_module; this isn't a good solution. Change private function names from double-undescore to single-underscore prefixes.
vu_module.py 67 (7 years ago) by clausted: Fix bug in numbering ROIs in io_module.readicmtext(). Enhance vu_module.dualgraph() to automatically show modeled data along with read data. Increase running average length in mdl_module; this isn't a good solution. Change private function names from double-undescore to single-underscore prefixes.
mdl_module.py 67 (7 years ago) by clausted: Fix bug in numbering ROIs in io_module.readicmtext(). Enhance vu_module.dualgraph() to automatically show modeled data along with read data. Increase running average length in mdl_module; this isn't a good solution. Change private function names from double-undescore to single-underscore prefixes.
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