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help/ 40 (8 years ago) by clausted: Move two html documentation files into /help subdirectory.
models2010/ 41 (8 years ago) by clausted: Moved old data class "SPRdataclass" and accompanying surface interaction model modules to /models2010 subdirectory. The plan is to implement these models for use with the "ba_class" and the modules in the parent directory. Should all the models be added to mdl_module or should they each go in their own module? I am undecided.
sphinx/ 54 (8 years ago) by clausted: Added fit_module and mdl_module to sphinx documentation.
exampledata/ 57 (8 years ago) by clausted: We are starting to implement automatic code testing using doctest. The example code in the main docstring of cal_module was modified for compliance.
Copying.txt 1 (9 years ago) by clausted: Initial import of Osprai project
License.txt 1 (9 years ago) by clausted: Initial import of Osprai project
test.py 29 (9 years ago) by clausted: Add a parameter ('cofa') to the 1to1 models that represents a concentration factor. This allows for easier analysis of a dilution series. For example, if two ROIs contain data for the same sample but at a dilutions of 1:2 and 1:4, the set 'conc' value to the molar stock concentration and set the two 'cofa' values to 0.5 and 0.25.
osprai_one.py 49 (8 years ago) by clausted: Add readcsv() function to io_module since sometimes we might have data in a spreadsheet with the left column containing time data and the rest of the columns containing sensorgram data. Add a flattenlist() function to cal_module. It might be useful when using the ba.roi.bgroi property. Sometimes it is a single number, but sometimes we'd like it to be a list of roi numbers.
vu_module.py 54 (8 years ago) by clausted: Added fit_module and mdl_module to sphinx documentation.
fit_module.py 54 (8 years ago) by clausted: Added fit_module and mdl_module to sphinx documentation.
mdl_module.py 55 (8 years ago) by clausted: Improve mdl_module to avoid SPR responses that overshoot Rmax.
io_module.py 56 (8 years ago) by clausted: Change to field names printed by writebiosensor() function.
cal_module.py 59 (8 years ago) by clausted: Work on doctest material for ba_class and cal_module. Now ba_class has built-in 1:1 interaction model simulator. This is used for testing functions and methods in this and other modules. Also change bgset() function so zero refers to first ROI. This is necessary for consistency--but old user scripts might need updating.
ba_class.py 59 (8 years ago) by clausted: Work on doctest material for ba_class and cal_module. Now ba_class has built-in 1:1 interaction model simulator. This is used for testing functions and methods in this and other modules. Also change bgset() function so zero refers to first ROI. This is necessary for consistency--but old user scripts might need updating.
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