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Revision 48 - (view) (annotate) - [select for diffs]
Modified Fri Feb 4 19:09:24 2011 UTC (8 years, 8 months ago) by clausted
File length: 8821 byte(s)
Diff to previous 47 , to selected 27
Minor formatting.
Revision 47 - (view) (annotate) - [select for diffs]
Modified Fri Feb 4 19:06:37 2011 UTC (8 years, 8 months ago) by clausted
File length: 8820 byte(s)
Diff to previous 28 , to selected 27
Changes only to the docstrings of four modules so that Sphinx can use them.  Update references in mainapi.rst.  
Revision 28 - (view) (annotate) - [select for diffs]
Modified Wed May 19 06:06:07 2010 UTC (9 years, 5 months ago) by clausted
File length: 8162 byte(s)
Diff to previous 27
Changes to params dictionary.  Valid values for 'fixed' are 'fixed' 'float' or an integer.  True and False are no longer acceptable.  Now mutli-ROI curve fitting seems to work!
Revision 27 - (view) (annotate) - [selected]
Modified Wed May 19 01:49:52 2010 UTC (9 years, 5 months ago) by clausted
File length: 8159 byte(s)
Diff to previous 17
New LMA function in fit_module allows us to simultaneously fit parameters to the data in several ROIs that share that parameter.  This is not yet fully tested.  More comments have been added to ba_class.  The __all__ variable has been added to osprai_one to assist the automatic documentation.
Revision 17 - (view) (annotate) - [select for diffs]
Modified Thu Apr 22 00:22:37 2010 UTC (9 years, 6 months ago) by clausted
File length: 6244 byte(s)
Diff to previous 13 , to selected 27
Start work on curve fitting.  Added two properties, model and params, to ba.roi in ba_class.  Add mdl_module which will hold functions that model SPR interactions.  
Revision 13 - (view) (annotate) - [select for diffs]
Modified Tue Apr 13 06:48:56 2010 UTC (9 years, 6 months ago) by clausted
File length: 5833 byte(s)
Diff to previous 12 , to selected 27
Fixed bugs in cal_module and ba_class where arrays of zeros--empty ROIs--would cause errors.
Revision 12 - (view) (annotate) - [select for diffs]
Modified Tue Apr 13 01:33:13 2010 UTC (9 years, 6 months ago) by clausted
File length: 5710 byte(s)
Diff to previous 9 , to selected 27
Addition of cal_module to provide a calibration tool and related features.  Added the time2val function to the ba class.  It has a bug now, but it will be useful for the calibration tool.
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Modified Sat Apr 10 00:21:02 2010 UTC (9 years, 6 months ago) by clausted
File length: 5440 byte(s)
Diff to previous 7 , to selected 27
Add readbiosensor() and writebiosensor() capabilities to io_module.  
Revision 7 - (view) (annotate) - [select for diffs]
Added Fri Apr 9 17:11:42 2010 UTC (9 years, 6 months ago) by clausted
File length: 6934 byte(s)
Diff to selected 27
Initial addition of ba_class, an alternative to SPRdataclass.  This class, ba or Biosensor Array, has one internal structure rather than different internal structures depending on whether SPRit or Biacore or other data was imported.  This makes the code smaller and more readable.  It provides default values, usually 0 or null text, that make it easier to import and export different file formats.  We also add io_module to provide import and export features.  We also add test.py as a convenience for testing and demonstration.

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