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Revision 60 - (view) (annotate) - [select for diffs]
Modified Thu May 19 20:13:13 2011 UTC (8 years, 4 months ago) by clausted
File length: 17472 byte(s)
Diff to previous 55 , to selected 54
First, add a function to model multiple (up to eight) injections called simple1to1_series().  Second, add functions to return dictionaries with default parameters, called simple1to1_def_params(), simple1to1_mtl_def_params(), and simple1to1_series_def_params().  Also add doctest examples to mdl_module.py.
Revision 55 - (view) (annotate) - [select for diffs]
Modified Tue Feb 22 00:27:41 2011 UTC (8 years, 7 months ago) by clausted
File length: 9594 byte(s)
Diff to previous 54
Improve mdl_module to avoid SPR responses that overshoot Rmax.
Revision 54 - (view) (annotate) - [selected]
Modified Wed Feb 16 21:29:02 2011 UTC (8 years, 7 months ago) by clausted
File length: 9274 byte(s)
Diff to previous 53
Added fit_module and mdl_module to sphinx documentation.
Revision 53 - (view) (annotate) - [select for diffs]
Modified Wed Feb 16 01:56:39 2011 UTC (8 years, 7 months ago) by clausted
File length: 9288 byte(s)
Diff to previous 29 , to selected 54
Add mdl_module documentation.  Also add sphinx html output to svn repository.
Revision 29 - (view) (annotate) - [select for diffs]
Modified Thu May 20 01:14:55 2010 UTC (9 years, 4 months ago) by clausted
File length: 6940 byte(s)
Diff to previous 26 , to selected 54
Add a parameter ('cofa') to the 1to1 models that represents a concentration factor.  This allows for easier analysis of a dilution series.  For example, if two ROIs contain data for the same sample but at a dilutions of 1:2 and 1:4, the set 'conc' value to the molar stock concentration and set the two 'cofa' values to 0.5 and 0.25.
Revision 26 - (view) (annotate) - [select for diffs]
Modified Fri May 14 22:36:12 2010 UTC (9 years, 5 months ago) by clausted
File length: 6413 byte(s)
Diff to previous 22 , to selected 54
Added mass-transport limitation model simple1to1_mtl.

Revision 22 - (view) (annotate) - [select for diffs]
Modified Tue Apr 27 07:17:58 2010 UTC (9 years, 5 months ago) by clausted
File length: 3301 byte(s)
Diff to previous 20 , to selected 54
The new module osprai_one provides access to the important functions in all of the other modules.  Documentation has been started with osprai_one.html.
Revision 20 - (view) (annotate) - [select for diffs]
Modified Mon Apr 26 21:59:45 2010 UTC (9 years, 5 months ago) by clausted
File length: 2996 byte(s)
Diff to previous 19 , to selected 54
Added clma(), a constrained LMA fitting function.  We can now set a lower and upper bound for fitting.  Be sure that the initial estimate is between, not at, the bounds.  It transforms the parameters using x1 = ((b-a)*tanh(x0)+b+a)/2 for the interval (a,b).  
Revision 19 - (view) (annotate) - [select for diffs]
Modified Fri Apr 23 01:45:38 2010 UTC (9 years, 5 months ago) by clausted
File length: 2996 byte(s)
Diff to previous 18 , to selected 54
Introduction of the fit_module.  This provides ordinary Levenberg-Marquart curvefitting.  The user can choose which model parameters are fixed and which are allowed to float.  Next, we can add a constrained version.

Revision 18 - (view) (annotate) - [select for diffs]
Modified Thu Apr 22 07:36:31 2010 UTC (9 years, 5 months ago) by clausted
File length: 2843 byte(s)
Diff to previous 17 , to selected 54
Add a simple 1to1 model function.
Revision 17 - (view) (annotate) - [select for diffs]
Added Thu Apr 22 00:22:37 2010 UTC (9 years, 5 months ago) by clausted
File length: 1082 byte(s)
Diff to selected 54
Start work on curve fitting.  Added two properties, model and params, to ba.roi in ba_class.  Add mdl_module which will hold functions that model SPR interactions.  

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