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root/osprai/osprai/trunk/osprai_one.py
Revision: 27
Committed: Wed May 19 01:49:52 2010 UTC (9 years, 3 months ago) by clausted
File size: 1921 byte(s)
Log Message:
New LMA function in fit_module allows us to simultaneously fit parameters to the data in several ROIs that share that parameter.  This is not yet fully tested.  More comments have been added to ba_class.  The __all__ variable has been added to osprai_one to assist the automatic documentation.
Line User Rev File contents
1 clausted 21 """
2     osprai_one: Module to tie together the various osprai tools.
3     Christopher Lausted, Institute for Systems Biology,
4     Yuhang Wan, OSPRAI developers
5 clausted 27 Last modified on 100517 (yymmdd)
6 clausted 21
7     Examples:
8     from osprai_one import *
9     """
10 clausted 27 __version__ = "100517"
11     __all__ = ['BiosensorArray', 'RegOfInterest',
12     'readsprit', 'readclamp', 'readicmtxt', 'readbiosensor',
13     'applygal', 'applykey', 'applymethod', 'writesprit',
14     'writeclamp', 'writebiosensor',
15     'dotgraph', 'linegraph', 'dualgraph', 'scatterplot',
16     'calibrate', 'bgset', 'bgsubt', 'copyinterval',
17     'mclma', 'clma', 'lma',
18     'drift', 'simple1to1', 'simple1to1_mtl',
19     'deepcopy', 'exit', 'getcwd', 'date',
20     'arange', 'zeros',]
21 clausted 21
22    
23     ## Import from OSPRAI project libraries
24    
25     from ba_class import BiosensorArray
26 clausted 27 from ba_class import RegOfInterest
27 clausted 21
28     from io_module import readsprit
29     from io_module import readclamp
30     from io_module import readicmtxt
31     from io_module import readbiosensor
32     from io_module import applygal
33     from io_module import applykey
34     from io_module import applymethod
35     from io_module import writesprit
36     from io_module import writeclamp
37 clausted 27 from io_module import writebiosensor
38 clausted 21
39     from vu_module import dotgraph
40     from vu_module import linegraph
41     from vu_module import dualgraph
42     from vu_module import scatterplot
43    
44     from cal_module import calibrate
45     from cal_module import bgset
46     from cal_module import bgsubt
47 clausted 24 from cal_module import copyinterval
48 clausted 21
49 clausted 27 from fit_module import mclma
50 clausted 21 from fit_module import clma
51     from fit_module import lma
52    
53     from mdl_module import drift
54     from mdl_module import simple1to1
55 clausted 26 from mdl_module import simple1to1_mtl
56 clausted 21
57    
58     ## Import from standard libraries.
59    
60     from copy import deepcopy
61     from sys import exit
62     from os import getcwd
63     from datetime import date
64     from numpy import arange
65     from numpy import zeros
66    
67     ################################# End of module #################################