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root/osprai/osprai/trunk/osprai_one.py
Revision: 60
Committed: Thu May 19 20:13:13 2011 UTC (8 years, 1 month ago) by clausted
File size: 2370 byte(s)
Log Message:
First, add a function to model multiple (up to eight) injections called simple1to1_series().  Second, add functions to return dictionaries with default parameters, called simple1to1_def_params(), simple1to1_mtl_def_params(), and simple1to1_series_def_params().  Also add doctest examples to mdl_module.py.
Line User Rev File contents
1 clausted 21 """
2     osprai_one: Module to tie together the various osprai tools.
3     Christopher Lausted, Institute for Systems Biology,
4     Yuhang Wan, OSPRAI developers
5 clausted 49 Last modified on 110207 (yymmdd)
6 clausted 21
7     Examples:
8     from osprai_one import *
9     """
10 clausted 60 __version__ = "110517"
11 clausted 27 __all__ = ['BiosensorArray', 'RegOfInterest',
12 clausted 49 'readsprit', 'readclamp', 'readicmtxt', 'readbiosensor', 'readcsv',
13 clausted 27 'applygal', 'applykey', 'applymethod', 'writesprit',
14     'writeclamp', 'writebiosensor',
15     'dotgraph', 'linegraph', 'dualgraph', 'scatterplot',
16 clausted 36 'calibrate', 'bgset', 'bgsubt', 'copyinterval', 'zerotime', 'zerovalue',
17 clausted 27 'mclma', 'clma', 'lma',
18 clausted 60 'drift', 'simple1to1', 'simple1to1_def_params',
19     'simple1to1_mtl', 'simple1to1_mtl_def_params',
20     'simple1to1_series', 'simple1to1_series_def_params',
21 clausted 27 'deepcopy', 'exit', 'getcwd', 'date',
22     'arange', 'zeros',]
23 clausted 21
24    
25     ## Import from OSPRAI project libraries
26    
27     from ba_class import BiosensorArray
28 clausted 27 from ba_class import RegOfInterest
29 clausted 21
30     from io_module import readsprit
31     from io_module import readclamp
32     from io_module import readicmtxt
33     from io_module import readbiosensor
34 clausted 49 from io_module import readcsv
35 clausted 21 from io_module import applygal
36     from io_module import applykey
37     from io_module import applymethod
38     from io_module import writesprit
39     from io_module import writeclamp
40 clausted 27 from io_module import writebiosensor
41 clausted 21
42     from vu_module import dotgraph
43     from vu_module import linegraph
44     from vu_module import dualgraph
45     from vu_module import scatterplot
46    
47     from cal_module import calibrate
48     from cal_module import bgset
49     from cal_module import bgsubt
50 clausted 24 from cal_module import copyinterval
51 clausted 36 from cal_module import zerotime
52     from cal_module import zerovalue
53 clausted 21
54 clausted 27 from fit_module import mclma
55 clausted 21 from fit_module import clma
56     from fit_module import lma
57    
58     from mdl_module import drift
59     from mdl_module import simple1to1
60 clausted 60 from mdl_module import simple1to1_def_params
61 clausted 26 from mdl_module import simple1to1_mtl
62 clausted 60 from mdl_module import simple1to1_mtl_def_params
63     from mdl_module import simple1to1_series
64     from mdl_module import simple1to1_series_def_params
65 clausted 21
66    
67     ## Import from standard libraries.
68    
69     from copy import deepcopy
70     from sys import exit
71     from os import getcwd
72     from datetime import date
73     from numpy import arange
74     from numpy import zeros
75    
76 clausted 49 ################################# End of module #################################