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Revision 66 - (view) (annotate) - [select for diffs]
Modified Thu Oct 13 19:49:53 2011 UTC (7 years, 8 months ago) by clausted
File length: 2479 byte(s)
Diff to previous 65 , to selected 27
Add methods BiosensorArray.save(filename) and .load(filename) which save serialized data files with the sba extension.
Revision 65 - (view) (annotate) - [select for diffs]
Modified Fri May 20 16:33:02 2011 UTC (8 years ago) by clausted
File length: 2480 byte(s)
Diff to previous 60 , to selected 27
Added much testing to all modules using docstrings and doctest.  To help this, I also added two optional parameters to mclma(), verbose and maxiter.  For example, use "mclma(rois, verbose=False, maxiter=99)" to run the regression up to 99 iterations without echoing progress to the standard output.

Revision 60 - (view) (annotate) - [select for diffs]
Modified Thu May 19 20:13:13 2011 UTC (8 years, 1 month ago) by clausted
File length: 2370 byte(s)
Diff to previous 49 , to selected 27
First, add a function to model multiple (up to eight) injections called simple1to1_series().  Second, add functions to return dictionaries with default parameters, called simple1to1_def_params(), simple1to1_mtl_def_params(), and simple1to1_series_def_params().  Also add doctest examples to mdl_module.py.
Revision 49 - (view) (annotate) - [select for diffs]
Modified Tue Feb 8 01:38:34 2011 UTC (8 years, 4 months ago) by clausted
File length: 2052 byte(s)
Diff to previous 36 , to selected 27
Add readcsv() function to io_module since sometimes we might have data in a spreadsheet with the left column containing time data and the rest of the columns containing sensorgram data.  
Add a flattenlist() function to cal_module.  It might be useful when using the ba.roi.bgroi property. Sometimes it is a single number, but sometimes we'd like it to be a list of roi numbers.  
Revision 36 - (view) (annotate) - [select for diffs]
Modified Sat Nov 20 01:12:26 2010 UTC (8 years, 6 months ago) by clausted
File length: 2011 byte(s)
Diff to previous 27
Add zerotime() and zerovalue() to cal_module for zeroing the initial values of sensorgrams.
Revision 27 - (view) (annotate) - [selected]
Modified Wed May 19 01:49:52 2010 UTC (9 years, 1 month ago) by clausted
File length: 1921 byte(s)
Diff to previous 26
New LMA function in fit_module allows us to simultaneously fit parameters to the data in several ROIs that share that parameter.  This is not yet fully tested.  More comments have been added to ba_class.  The __all__ variable has been added to osprai_one to assist the automatic documentation.
Revision 26 - (view) (annotate) - [select for diffs]
Modified Fri May 14 22:36:12 2010 UTC (9 years, 1 month ago) by clausted
File length: 1331 byte(s)
Diff to previous 24 , to selected 27
Added mass-transport limitation model simple1to1_mtl.

Revision 24 - (view) (annotate) - [select for diffs]
Modified Wed Apr 28 01:00:17 2010 UTC (9 years, 1 month ago) by clausted
File length: 1293 byte(s)
Diff to previous 21 , to selected 27
Added copyinterval() to cal_module.  This cuts out a slice of SPR data between two timepoints and puts it in a new ba object.  
Revision 21 - (view) (annotate) - [select for diffs]
Added Tue Apr 27 07:17:13 2010 UTC (9 years, 1 month ago) by clausted
File length: 1257 byte(s)
Diff to selected 27
The new module osprai_one provides access to the important functions in all of the other modules.  Documentation has been started with osprai_one.html.

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