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root/osprai/osprai/trunk/osprai_one.py
Revision: 27
Committed: Wed May 19 01:49:52 2010 UTC (9 years, 2 months ago) by clausted
File size: 1921 byte(s)
Log Message:
New LMA function in fit_module allows us to simultaneously fit parameters to the data in several ROIs that share that parameter.  This is not yet fully tested.  More comments have been added to ba_class.  The __all__ variable has been added to osprai_one to assist the automatic documentation.
Line File contents
1 """
2 osprai_one: Module to tie together the various osprai tools.
3 Christopher Lausted, Institute for Systems Biology,
4 Yuhang Wan, OSPRAI developers
5 Last modified on 100517 (yymmdd)
6
7 Examples:
8 from osprai_one import *
9 """
10 __version__ = "100517"
11 __all__ = ['BiosensorArray', 'RegOfInterest',
12 'readsprit', 'readclamp', 'readicmtxt', 'readbiosensor',
13 'applygal', 'applykey', 'applymethod', 'writesprit',
14 'writeclamp', 'writebiosensor',
15 'dotgraph', 'linegraph', 'dualgraph', 'scatterplot',
16 'calibrate', 'bgset', 'bgsubt', 'copyinterval',
17 'mclma', 'clma', 'lma',
18 'drift', 'simple1to1', 'simple1to1_mtl',
19 'deepcopy', 'exit', 'getcwd', 'date',
20 'arange', 'zeros',]
21
22
23 ## Import from OSPRAI project libraries
24
25 from ba_class import BiosensorArray
26 from ba_class import RegOfInterest
27
28 from io_module import readsprit
29 from io_module import readclamp
30 from io_module import readicmtxt
31 from io_module import readbiosensor
32 from io_module import applygal
33 from io_module import applykey
34 from io_module import applymethod
35 from io_module import writesprit
36 from io_module import writeclamp
37 from io_module import writebiosensor
38
39 from vu_module import dotgraph
40 from vu_module import linegraph
41 from vu_module import dualgraph
42 from vu_module import scatterplot
43
44 from cal_module import calibrate
45 from cal_module import bgset
46 from cal_module import bgsubt
47 from cal_module import copyinterval
48
49 from fit_module import mclma
50 from fit_module import clma
51 from fit_module import lma
52
53 from mdl_module import drift
54 from mdl_module import simple1to1
55 from mdl_module import simple1to1_mtl
56
57
58 ## Import from standard libraries.
59
60 from copy import deepcopy
61 from sys import exit
62 from os import getcwd
63 from datetime import date
64 from numpy import arange
65 from numpy import zeros
66
67 ################################# End of module #################################