ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/osprai/osprai/trunk/osprai_one.py
Revision: 60
Committed: Thu May 19 20:13:13 2011 UTC (8 years, 5 months ago) by clausted
File size: 2370 byte(s)
Log Message:
First, add a function to model multiple (up to eight) injections called simple1to1_series().  Second, add functions to return dictionaries with default parameters, called simple1to1_def_params(), simple1to1_mtl_def_params(), and simple1to1_series_def_params().  Also add doctest examples to mdl_module.py.
Line File contents
1 """
2 osprai_one: Module to tie together the various osprai tools.
3 Christopher Lausted, Institute for Systems Biology,
4 Yuhang Wan, OSPRAI developers
5 Last modified on 110207 (yymmdd)
6
7 Examples:
8 from osprai_one import *
9 """
10 __version__ = "110517"
11 __all__ = ['BiosensorArray', 'RegOfInterest',
12 'readsprit', 'readclamp', 'readicmtxt', 'readbiosensor', 'readcsv',
13 'applygal', 'applykey', 'applymethod', 'writesprit',
14 'writeclamp', 'writebiosensor',
15 'dotgraph', 'linegraph', 'dualgraph', 'scatterplot',
16 'calibrate', 'bgset', 'bgsubt', 'copyinterval', 'zerotime', 'zerovalue',
17 'mclma', 'clma', 'lma',
18 'drift', 'simple1to1', 'simple1to1_def_params',
19 'simple1to1_mtl', 'simple1to1_mtl_def_params',
20 'simple1to1_series', 'simple1to1_series_def_params',
21 'deepcopy', 'exit', 'getcwd', 'date',
22 'arange', 'zeros',]
23
24
25 ## Import from OSPRAI project libraries
26
27 from ba_class import BiosensorArray
28 from ba_class import RegOfInterest
29
30 from io_module import readsprit
31 from io_module import readclamp
32 from io_module import readicmtxt
33 from io_module import readbiosensor
34 from io_module import readcsv
35 from io_module import applygal
36 from io_module import applykey
37 from io_module import applymethod
38 from io_module import writesprit
39 from io_module import writeclamp
40 from io_module import writebiosensor
41
42 from vu_module import dotgraph
43 from vu_module import linegraph
44 from vu_module import dualgraph
45 from vu_module import scatterplot
46
47 from cal_module import calibrate
48 from cal_module import bgset
49 from cal_module import bgsubt
50 from cal_module import copyinterval
51 from cal_module import zerotime
52 from cal_module import zerovalue
53
54 from fit_module import mclma
55 from fit_module import clma
56 from fit_module import lma
57
58 from mdl_module import drift
59 from mdl_module import simple1to1
60 from mdl_module import simple1to1_def_params
61 from mdl_module import simple1to1_mtl
62 from mdl_module import simple1to1_mtl_def_params
63 from mdl_module import simple1to1_series
64 from mdl_module import simple1to1_series_def_params
65
66
67 ## Import from standard libraries.
68
69 from copy import deepcopy
70 from sys import exit
71 from os import getcwd
72 from datetime import date
73 from numpy import arange
74 from numpy import zeros
75
76 ################################# End of module #################################