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"""
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Christopher Lausted, Institute for Systems Biology
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Last modified on 100413 (yymmdd)
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Small script to test ba_class, io_module, etc.
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"""
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## Import modules.
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import vu_module as vu
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import io_module as io
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import cal_module as cal
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## Reload in case code has changed.
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reload (vu)
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reload(io)
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reload(cal)
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print "Loading an SPR data file..."
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#ba1 = io.readbiosensor("example-biosensor.txt")
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ba1 = io.readicmtxt("example-icm.txt")
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#ba1 = io.readsprit("example-sprit.txt")
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#ba1 = io.applykey(ba1, "example-key.tsv")
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#ba1.set_plot_all()
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#ba1.set_plot_list(range(6))
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#ba1.plot()
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#io.writesprit(ba1,"testwritesprit.txt")
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#io.writeclamp(ba1,"testwriteclamp.txt")
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#io.writebiosensor(ba1, "testwritebiosensor.txt")
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print "Plotting the raw data file..."
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vu.linegraph(ba1)
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#vu.dotgraph(ba1)
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#vu.dualgraph(ba1, ba1)
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print "Plotting the calibrated data..."
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ba2 = cal.calibrate(ba1, ba1, 2850, 3120)
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vu.linegraph(ba2, "Calibrated SPR Data")
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print "Use ROI #16 as background, subtract, and plot..."
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cal.bgset(ba2, 16)
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ba2 = cal.bgsubt(ba2)
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vu.linegraph(ba2, "Calibrated & Referenced SPR Data")
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print "Test of scatterplot using time points 500, 1000, 1500, 2000"
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vu.scatterplot(ba2, 3600, 4200, 3600, 4700, "Scatterplot")
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print "Done with test."
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#input("Done with test. Press any key")
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