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root/osprai/osprai/trunk/test.py
Revision: 14
Committed: Wed Apr 14 00:40:11 2010 UTC (9 years, 6 months ago) by clausted
File size: 1320 byte(s)
Log Message:
Added features to select time points for measuring binding responses and to output that data to a file or scatterplot.  Added the background subtraction feature to cal_module.  Also a few bug fixes. --CGL
Line File contents
1 """
2 Christopher Lausted, Institute for Systems Biology
3 Last modified on 100413 (yymmdd)
4 Small script to test ba_class, io_module, etc.
5 """
6
7 ## Import modules.
8 import vu_module as vu
9 import io_module as io
10 import cal_module as cal
11 ## Reload in case code has changed.
12 reload (vu)
13 reload(io)
14 reload(cal)
15
16 print "Loading an SPR data file..."
17 #ba1 = io.readbiosensor("example-biosensor.txt")
18 ba1 = io.readicmtxt("example-icm.txt")
19 #ba1 = io.readsprit("example-sprit.txt")
20 #ba1 = io.applykey(ba1, "example-key.tsv")
21 #ba1.set_plot_all()
22 #ba1.set_plot_list(range(6))
23 #ba1.plot()
24
25 #io.writesprit(ba1,"testwritesprit.txt")
26 #io.writeclamp(ba1,"testwriteclamp.txt")
27 #io.writebiosensor(ba1, "testwritebiosensor.txt")
28
29 print "Plotting the raw data file..."
30 vu.linegraph(ba1)
31 #vu.dotgraph(ba1)
32 #vu.dualgraph(ba1, ba1)
33
34 print "Plotting the calibrated data..."
35 ba2 = cal.calibrate(ba1, ba1, 2850, 3120)
36 vu.linegraph(ba2, "Calibrated SPR Data")
37
38 print "Use ROI #16 as background, subtract, and plot..."
39 cal.bgset(ba2, 16)
40 ba2 = cal.bgsubt(ba2)
41 vu.linegraph(ba2, "Calibrated & Referenced SPR Data")
42
43 print "Test of scatterplot using time points 500, 1000, 1500, 2000"
44 vu.scatterplot(ba2, 3600, 4200, 3600, 4700, "Scatterplot")
45
46 print "Done with test."
47 #input("Done with test. Press any key")