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r536
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branches/ 488 (12 years ago) by duarte: T
tags/ 527 (12 years ago) by duarte: Tagging ver 0.9.2 for CMView 0.9.2
trunk/ 536 (12 years ago) by duarte: Fixed GraphAverager: wasn't working since we introduced JUNG. Also added some better output in checkSequences() when sequence don't match between alignment/graphs. Now we take the 2 sequences calculate a pairwise alignment (using jaligner) and output it. This is useful for picking up unobserves and similars.
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