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r445
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tools/ 419 (12 years ago) by duarte: Re-branching for JUNG2 development
sadp/ 426 (12 years ago) by duarte: Now PairWiseAlignmentConverter and PairwiseAlignmentGraphConverter work in the new JUNG framework. New class IntPairComparator Now sorting output in RIGraph.write_graph_to_file
actionTools/ 437 (12 years ago) by lpetzo: an abstract getter
tinker/ 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
proteinstructure/ 444 (12 years ago) by filippis: Pdb.java: -calc_atom_dist_matrix method added -calc_dist_matrix works also for multi atom contact types by choosing the min distance
scoreTargetMoves.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
iterateNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
iterateUpperNbs.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testClusterConnection.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testMySQLConnection.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
writeTargetMoves.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
Manifest.txt 419 (12 years ago) by duarte: Re-branching for JUNG2 development
hashIterNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
createGraphDb.sh 419 (12 years ago) by duarte: Re-branching for JUNG2 development
rewriteNBHood_parallel.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
cnCoarseNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testPymolServer.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
listInfoGain.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
cnHashIterNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
makeNbhTbl.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
cnEvalTargetNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testGraph2Pml.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
cnex1.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testGraphClustering.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
iterateUpperNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
listInfoLoss.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
rewriteNBHood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testPyMol.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
maxInfoGain.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
minInfoGain.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
iterEvalNbhood.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
iterateNbs.java 419 (12 years ago) by duarte: Re-branching for JUNG2 development
testResidueSelectionString.java 422 (12 years ago) by duarte: Now selection string stuff working: transfered methods from old NodeSet to Interval as static methods.
testGetChains.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
reconstruct.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
genGraph.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
benchmarkGraphAlgorithm.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
testPdb.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
genDbGraph.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
testJUNGframework.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
testDeltaDistanceMap.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
calculateGridDensity.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
testGraphAverager.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
compareCMs.java 441 (12 years ago) by duarte: Now Pdb constructors don't load data but rather intialise the pdbCode, loading occurs upon call of load(pdbChainCode,modelSerial) New methods getChains() and getModels() in all Pdb classes New Exception PdbLoadError New tester for getChains and getModels: testGetChains Changed all calls to Pdb construction accordingly (includes changing excpetions)
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