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root/owl/branches/aglappe-jung/runGenDbGraph.sh
Revision: 419
Committed: Thu Nov 22 14:09:18 2007 UTC (11 years, 11 months ago) by duarte
File size: 353 byte(s)
Log Message:
Re-branching for JUNG2 development
Line User Rev File contents
1 duarte 395 #!/bin/sh
2    
3     if [ -z "$4" ]
4     then
5     echo "usage: $0 <listfile> <cutoff> <ct> <outdb>"
6     echo "where listfile contains two columns, pdb code and chain code"
7     exit 1
8     fi
9    
10     listfile=$1
11     cutoff=$2
12     ct=$3
13     outdb=$4
14    
15    
16     exec 0<$listfile
17    
18     while read pdbCode pdbChainCode
19     do
20     java -Xmx1024m genDbGraph -p $pdbCode -c $pdbChainCode -d $cutoff -t $ct -o $outdb
21     done

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svn:executable *