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r426
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ContactMap.java 420 (11 years ago) by duarte: First implementation of the new graph framework using JUNG2. Still a few classes to fix, but all basic functionality is there. NOTE: at the moment ProtStructGraph is a SparseGraph which doesn't guarantee that the graph has no parallel or loop edges (I thought that would be solved by using the SimpleGraph interface but it doesn't, that's only a marker interface)
ContactMapConstructorError.java 419 (11 years ago) by duarte: Re-branching for JUNG2 development
IOUtil.java 419 (11 years ago) by duarte: Re-branching for JUNG2 development
SADP.java 426 (11 years ago) by duarte: Now PairWiseAlignmentConverter and PairwiseAlignmentGraphConverter work in the new JUNG framework. New class IntPairComparator Now sorting output in RIGraph.write_graph_to_file
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