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root/owl/tags/aglappe-0.8.6/runGenDbGraph.sh
Revision: 395
Committed: Thu Nov 8 12:53:09 2007 UTC (11 years, 11 months ago) by duarte
Original Path: trunk/runGenDbGraph.sh
File size: 353 byte(s)
Log Message:
Initial commit. Provisional script to use the genDbGraph program when iterating through loads of structures, because of the "memory leak" problem is not possible to use directly genDbGraph to iterate over many structures (~1000)
Line User Rev File contents
1 duarte 395 #!/bin/sh
2    
3     if [ -z "$4" ]
4     then
5     echo "usage: $0 <listfile> <cutoff> <ct> <outdb>"
6     echo "where listfile contains two columns, pdb code and chain code"
7     exit 1
8     fi
9    
10     listfile=$1
11     cutoff=$2
12     ct=$3
13     outdb=$4
14    
15    
16     exec 0<$listfile
17    
18     while read pdbCode pdbChainCode
19     do
20     java -Xmx1024m genDbGraph -p $pdbCode -c $pdbChainCode -d $cutoff -t $ct -o $outdb
21     done

Properties

Name Value
svn:executable *