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vecmath/
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tools/
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tinker/
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sequence/
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sadp/
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proteinstructure/
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ppi/
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graphAveraging/
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actionTools/
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writeTargetMoves.java
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testResidueSelectionString.java
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testPymolServer.java
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testPyMol.java
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testPdb.java
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testMySQLConnection.java
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testJUNGframework.java
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testGraph2Pml.java
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testGetChains.java
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testDeltaDistanceMap.java
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testDbRIGraph.java
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testClusterConnection.java
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scoreTargetMoves.java
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rewriteNBHood_parallel.java
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rewriteNBHood.java
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reconstruct.java
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minInfoGain.java
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maxInfoGain.java
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makeNbhTbl.java
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make-aglappe.sh
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listInfoLoss.java
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listInfoGain.java
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iterateUpperNbs.java
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iterateUpperNbhood.java
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iterateNbs.java
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iterateNbhood.java
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iterEvalNbhood.java
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hashIterNbhood.java
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genGraph.java
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genDbGraph.java
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dumpseq.java
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dumppdb.java
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doClassifySingleModels.sh
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createGraphDb.sh
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computeEnergies.java
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compareCMs.java
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cnex1.java
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cnHashIterNbhood.java
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cnEvalTargetNbhood.java
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cnCoarseNbhood.java
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calculateGridDensity.java
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benchmarkGraphAlgorithm.java
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averageGraph.java
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Manifest.txt
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