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#!/bin/sh |
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if [ -z "$2" ] |
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then |
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echo "Usage: make-owl.sh <svn url> <tempdir> [<rev>]" |
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echo "e.g. for svn url: svn://black/aglappe/trunk or svn://bioinformatics.org/svnroot/owl/tags/owl-1.2.0" |
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echo "Optionally specify a revision to be exported instead of head" |
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exit |
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fi |
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|
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svnurl=$1 |
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tempdir=$2 |
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rev="" |
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if [ -n "$3" ] |
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then |
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rev=$3 |
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fi |
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|
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echo "Compiling with:" |
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javac -version |
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echo "" |
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|
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|
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cd $tempdir |
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|
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tag=`basename $svnurl` |
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|
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revStr="" |
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if [ -n "$rev" ] |
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then |
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revStr="-r $rev" |
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fi |
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|
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# exporting from svn |
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echo "Exporting source from svn" |
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svn export $revStr $svnurl |
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if [ "$?" -ne "0" ] |
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then |
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echo "Couldn't export from svn. Exiting" |
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exit 1 |
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fi |
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|
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|
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# compiling |
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echo "Compiling..." |
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cd $tag/src |
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|
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|
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jarfiles=`ls ../jars/*.jar` |
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CLASSPATH="." |
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for jarfile in $jarfiles |
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do |
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CLASSPATH="$jarfile:$CLASSPATH" |
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done |
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jarfiles=`ls ../jars/uniprot/*.jar` |
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for jarfile in $jarfiles |
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do |
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CLASSPATH="$jarfile:$CLASSPATH" |
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done |
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|
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echo $CLASSPATH |
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|
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|
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javac \ |
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*.java \ |
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owl/core/structure/*.java \ |
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owl/core/structure/graphs/*.java \ |
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owl/core/structure/scoring/*.java \ |
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owl/core/sequence/*.java \ |
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owl/core/sequence/alignment/*.java \ |
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owl/core/util/*.java \ |
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owl/core/util/actionTools/*.java \ |
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owl/core/connections/*.java \ |
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owl/core/connections/pisa/*.java \ |
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owl/core/features/*.java \ |
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owl/core/runners/*.java \ |
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owl/core/runners/blast/*.java \ |
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owl/core/runners/tinker/*.java |
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|
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# creating jar file |
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echo "Creating jar file: $tag.jar ..." |
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jar -cfm ../../$tag.jar ../Manifest.txt . |
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|
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# removing $tag temp directory |
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cd ../.. |
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rm -rf $tag |
