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root/owl/tags/owl-1.9.3/scripts/make-owl.sh
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# Line 10 | Line 10
10   tempdir=$1
11   aglappetag=$2
12  
13 < CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:/project/StruPPi/jars/JRclient-RE817.jar:/project/StruPPi/jars/java-getopt-1.0.13.jar:/project/StruPPi/jars/junit-3.8.1.jar:/project/StruPPi/jars/commons-codec-1.3.jar:/project/StruPPi/jars/xmlrpc-client-3.0.jar:/project/StruPPi/jars/xmlrpc-common-3.0.jar:/project/StruPPi/jars/ws-commons-util-1.0.1.jar:/project/StruPPi/jars/vecmath.jar:/project/StruPPi/jars/Jama-1.0.2.jar:/project/StruPPi/jars/jaligner.jar:/project/StruPPi/jars/jung/collections-generic-4.01.jar:/project/StruPPi/jars/jung/jung-api-2.0-alpha2.jar:/project/StruPPi/jars/jung/jung-graph-impl-2.0-alpha2.jar
13 > CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:\
14 > /project/StruPPi/jars/JRclient-RE817.jar:\
15 > /project/StruPPi/jars/java-getopt-1.0.13.jar:\
16 > /project/StruPPi/jars/junit-3.8.1.jar:\
17 > /project/StruPPi/jars/commons-codec-1.3.jar:\
18 > /project/StruPPi/jars/xmlrpc-client-3.0.jar:\
19 > /project/StruPPi/jars/xmlrpc-common-3.0.jar:\
20 > /project/StruPPi/jars/ws-commons-util-1.0.1.jar:\
21 > /project/StruPPi/jars/vecmath.jar:\
22 > /project/StruPPi/jars/Jama-1.0.2.jar:\
23 > /project/StruPPi/jars/jaligner.jar:\
24 > /project/StruPPi/jars/jung/collections-generic-4.01.jar:\
25 > /project/StruPPi/jars/jung/jung-api-2.0-beta1.jar:\
26 > /project/StruPPi/jars/jung/jung-graph-impl-2.0-beta1.jar:\
27 > /project/StruPPi/jars/jung/jung-algorithms-2.0-beta1.jar
28  
29   cd $tempdir
30  
# Line 36 | Line 50
50   # compiling
51   echo "Compiling..."
52   cd $aglappetag
53 < javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java
53 > javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java
54  
55   # creating jar file
56   echo "Creating jar file: $aglappetag.jar ..."

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