| 1 |
<?php |
| 2 |
include_once("inc/settings.php"); |
| 3 |
|
| 4 |
if(!isset($_GET['job_name'])) { |
| 5 |
error('No job name specified.'); |
| 6 |
} else { |
| 7 |
$job_name = $_GET['job_name']; |
| 8 |
} |
| 9 |
|
| 10 |
function get_result_dir($job_name) { |
| 11 |
$j = escapeshellcmd($job_name); |
| 12 |
return $GLOBALS['server_root']."results/".$j."/"; |
| 13 |
} |
| 14 |
|
| 15 |
function get_template_file($job_name) { |
| 16 |
return get_result_file($job_name, ".man.templates"); |
| 17 |
} |
| 18 |
|
| 19 |
function get_seq_file($job_name) { |
| 20 |
return get_result_file($job_name, ".fa"); |
| 21 |
} |
| 22 |
|
| 23 |
function get_mb_job_name($job_name) { |
| 24 |
return 'MB-'.$job_name; |
| 25 |
} |
| 26 |
|
| 27 |
function run_modeling($job_name) { |
| 28 |
global $use_parallel_tinker; |
| 29 |
write_mb_lock_file($job_name); |
| 30 |
$t_file = get_template_file($job_name); |
| 31 |
$s_file = get_seq_file($job_name); |
| 32 |
$o_dir = get_result_dir($job_name); |
| 33 |
|
| 34 |
# old shell-script |
| 35 |
#$cmd = sprintf("qsub -V -q all.q -N %s -o %s -e %s /project/StruPPi/CASP8/scripts/runall.sh -i %s -o %s -t %s",get_mb_job_name($job_name), $o_dir, $o_dir, $s_file, $o_dir, $t_file); |
| 36 |
|
| 37 |
if($use_parallel_tinker) { |
| 38 |
# brand new parallel tinker java code |
| 39 |
$cmd = sprintf("qsub -V -q all.q -N %s -o %s -e %s /project/StruPPi/CASP8/scripts/model_it -A -i %s -o %s -t %s",get_mb_job_name($job_name), $o_dir, $o_dir, $s_file, $o_dir, $t_file); |
| 40 |
} else { |
| 41 |
# standard java code |
| 42 |
$cmd = sprintf("qsub -V -q all.q -N %s -o %s -e %s /project/StruPPi/CASP8/scripts/model_it -i %s -o %s -t %s",get_mb_job_name($job_name), $o_dir, $o_dir, $s_file, $o_dir, $t_file); |
| 43 |
} |
| 44 |
|
| 45 |
$retval = 0; |
| 46 |
system($cmd,$retval); |
| 47 |
#echo($cmd); |
| 48 |
echo '<p></p>'; |
| 49 |
return $retval; |
| 50 |
} |
| 51 |
|
| 52 |
function get_mb_lock_file($job_name) { |
| 53 |
return get_result_file($job_name, ".MB.lock"); |
| 54 |
} |
| 55 |
|
| 56 |
// writes a lock file indicating that modeling was started so that it won't be resubmitted when the browser's |
| 57 |
// 'back' button is used. The creation time of the file indicates when the job was started. The finishing time |
| 58 |
// can be taken from the creation time of the pdb file. |
| 59 |
function write_mb_lock_file($job_name) { |
| 60 |
touch(get_mb_lock_file($job_name)); |
| 61 |
} |
| 62 |
|
| 63 |
# make sure that template file exists, otherwise can't model |
| 64 |
if(!file_exists(get_template_file($job_name))) { |
| 65 |
error('Template file for job'.$job_name.' not found.'); |
| 66 |
} |
| 67 |
|
| 68 |
?> |
| 69 |
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> |
| 70 |
<html xmlns="http://www.w3.org/1999/xhtml"> |
| 71 |
|
| 72 |
<head> |
| 73 |
<title>Structure prediction server</title> |
| 74 |
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> |
| 75 |
<link rel="stylesheet" type="text/css" href="css/default.css" /> |
| 76 |
</head> |
| 77 |
<body> |
| 78 |
|
| 79 |
|
| 80 |
<?php include_once("inc/owl_header.inc.php") ?> |
| 81 |
<h3>Run structure modelling</h3> |
| 82 |
<?php |
| 83 |
|
| 84 |
echo "<p><b>Job name:</b> ".$job_name."</p>"; |
| 85 |
|
| 86 |
echo '<p><b>Templates:</b><br/>'; |
| 87 |
$templates = file(get_template_file($job_name)); |
| 88 |
foreach($templates as $key => $val) { |
| 89 |
echo $val."<br/>"; |
| 90 |
} |
| 91 |
echo '</p>'; |
| 92 |
|
| 93 |
// create output dir |
| 94 |
#echo "<p>Creating output directory...<br/>"; |
| 95 |
#create_output_dir($job_name); |
| 96 |
|
| 97 |
if(file_exists(get_mb_lock_file($job_name))) { |
| 98 |
echo '<p>Job already submitted.</p>'; |
| 99 |
} else { |
| 100 |
|
| 101 |
// run templateSelection with output dir and sequence file |
| 102 |
$result = run_modeling($job_name); |
| 103 |
if( $result != 0) { |
| 104 |
echo '<p><font color="red">An error occured </font>(exit status='.$result.'). See the <a href="'.get_error_log_url($job_name).'">error log</a>.</p>'; |
| 105 |
} |
| 106 |
} |
| 107 |
|
| 108 |
|
| 109 |
?> |
| 110 |
|
| 111 |
<div class="buttons"> |
| 112 |
<a href="wait_for_modeling_result.php?job_name=<? echo $job_name; ?>"><img src="images/eye.png" alt="" /> Check results</a> |
| 113 |
</div> |
| 114 |
|
| 115 |
</body> |
| 116 |
</html> |
