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root/owl/tags/owl-for-eppic-2.0.0
r1704
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jars/ 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
modelit/ 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
reconstruct/ 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
scripts/ 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
src/ 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
.classpath 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
.project 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
LICENSE 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
build.xml 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
gpl.txt 1631 (4 years ago) by jmduarteg: Tagging for eppic release 2.0.0 - many bug fixes, especially in cif and pdb parsers. Now hopefully a lot more robust. Cif parser was tested in whole PDB as of Feb 2013. File guesser will be more flexible with PDB files: it allows now a lot more possible first lines - all elements added to AtomType - better dealing with unknown elements when reading from PDB file - fixed bug in ASA calculation: for finding neighbours we were taking default vdw radius instead of one set in setRadius - BlastXML parser can now read both raw xml and gzipped xml blast output (autodetecting it)
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svn:ignore .classpath .project .settings build