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r1704
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owl/ 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
examples/ 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
enumerateAssemblies.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
testClusterConnection.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
computeEnergies.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
scorePdbSet.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
testDbRIGraph.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
reconstruct.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
genGraph.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
getPisaAssemblyPreds.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
checkChirality.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
superimposeMult.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
benchmarkGraphAlgorithm.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
calcVolsAndSurfs.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
unitCellVol.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
scoreGeomOfPdbs.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
addSeq2Mcma.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
genDbGraph.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
compareAlignments.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
mirrorIt.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
testAICGraph.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
averageGraph.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
writeSASAtoBFactor.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
mapMutations.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
pir2fasta.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
testPyMol.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
testJUNGframework.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
enumerateInterfaces.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
dumppdb.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
scoreDecoys.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
runMD.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
alignSeq.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
pairwiseSeqId.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
calculateGridDensity.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
dumpseq.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
writePerAtomDistancesToBFactor.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
compareCMs.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
calcMass.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
clustal2fasta.java 1693 (5 years ago) by jmduarteg: Tagging for eppic release 2.0.3 - more PDB metadata parsing: biounit assembly and release date - improved rmsd calculation: new OptimalSuperposition class introduced - improvements in interface calculation: now going to 12th cell - introduced chain clusters and interface clusters - some more checks in cif file parsing: now won't crash on phenix files
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