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r317
File Last Change
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proteinstructure/ 317 (10 years ago) by duarte: Fixed some comments
sadp/ 316 (10 years ago) by lpetzo: initial version of sadp
tools/ 203 (11 years ago) by duarte: Using apache xmlrpc version 3.0 in PyMolServerOutputStream
Manifest.txt 230 (11 years ago) by stehr: added class NodeSet
benchmarkGraphAlgorithm.java 254 (11 years ago) by duarte: Also writing graph to file
calculateGridDensity.java 303 (10 years ago) by stehr: added writeResultsToFile()
cnCoarseNbhood.java 272 (11 years ago) by lappe:
cnEvalTargetNbhood.java 271 (11 years ago) by lappe:
cnHashIterNbhood.java 266 (11 years ago) by lappe:
cnex1.java 265 (11 years ago) by lappe: final version incl. pessimistic tie-break
compareCMs.java 215 (11 years ago) by stehr: some clean up of exceptions in Pdb and Graph classes: merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError, created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
genDbGraph.java 285 (11 years ago) by duarte: Fixed a few bugs in reading of list file Better output and error messages
genGraph.java 285 (11 years ago) by duarte: Fixed a few bugs in reading of list file Better output and error messages
hashIterNbhood.java 267 (11 years ago) by lappe:
iterEvalNbhood.java 269 (11 years ago) by lappe:
iterateNbhood.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
iterateNbs.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
iterateUpperNbhood.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
iterateUpperNbs.java 268 (11 years ago) by lappe:
listInfoGain.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
listInfoLoss.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
makeNbhTbl.java 24 (12 years ago) by stehr: moved executables (classes with main function) to root directory
maxInfoGain.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
minInfoGain.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
rewriteNBHood.java 299 (10 years ago) by lappe: only one out of both BB/SC insertion per moves based on sc/bb domin. out of temp shell
rewriteNBHood_parallel.java 291 (11 years ago) by lappe: 1st version scoring with pdb_reps_graph_4_2 and full nbhood string
scoreTargetMoves.java 312 (10 years ago) by lappe:
testClusterConnection.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
testGraph2Pml.java 116 (11 years ago) by filippis: testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
testMySQLConnection.java 202 (11 years ago) by duarte: MySQLConnection now throwing SQLException on connect Many files changed following this: all calling classes now re-throwing or catching the SQLException
testPdb.java 215 (11 years ago) by stehr: some clean up of exceptions in Pdb and Graph classes: merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError, created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
testPyMol.java 114 (11 years ago) by duarte: Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
testPymolServer.java 203 (11 years ago) by duarte: Using apache xmlrpc version 3.0 in PyMolServerOutputStream
writeTargetMoves.java 313 (10 years ago) by lappe: short form to compress nbstrings = condense multiple occurence of a symbol in the nbhstring to 1. Still a bitz buggy. sometimes 2 symbols are left in ?
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