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jars/ 1597 (6 years ago) by jmduarteg: Several changes related to blast: - now supporting blast+ blastp. - blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired - refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+ Also updated uniprot jar.
modelit/ 1301 (8 years ago) by hstehr: overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
reconstruct/ 992 (9 years ago) by jmduarteg: Removed unneeded code
scripts/ 1596 (6 years ago) by jmduarteg: Now using makeblastdb (for blast+) and also only getting by default uniref100
src/ 1619 (6 years ago) by jmduarteg: Fixed bug in ASA calculation: was taking in finding neighbours procedure the default vdw element radius rather thatn the one set in setRadius: NOTE this changes slightly the area values we are getting. Fixed issue in parsing of atoms when no atom type can be guessed: now whenever we can't guess we write a warning, also setRadius will use default radius if element not known (instead of null pointing)
.classpath 1546 (7 years ago) by jmduarteg: Removing unused class and thus JRclient dependency
.project 1347 (8 years ago) by hstehr: moving project CCCP to this repository
LICENSE 974 (9 years ago) by duarte: Adding license files
build.xml 1548 (7 years ago) by jmduarteg: New target jar-core-only (now default) which will build the default and core packages only and pack all jars except for the uniprot.jar
gpl.txt 974 (9 years ago) by duarte: Adding license files
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svn:ignore .classpath .project .settings build