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r1330
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reconstruct/ 992 (9 years ago) by jmduarteg: Removed unneeded code
scripts/ 1289 (8 years ago) by jmduarteg: Introduced constant for formatdb executable
modelit/ 1301 (8 years ago) by hstehr: overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
jars/ 1309 (8 years ago) by jmduarteg: New jar for uniprot JAPI
src/ 1330 (8 years ago) by jmduarteg: Now the re-numbering of residue serials in PDB files has been improved. Instead of aligning the sequences whenever the serials don't match SEQRES, we first try to see if there is a shift in the serials with respect to SEQRES (happens in many cases). Only if we can't find a shift that fully matches SEQRES we proceed to re-aligning. We also treat properly now the ins codes. Mapping is as close to CIF as possible. The parsers test passes for the whole cullpdb20. For some entries like 2ofz the mapping does not coincide 100% with CIF as there are ambiguities in the alignment.
Manifest.txt 968 (9 years ago) by duarte: Updated make-aglappe script (and renamed to make-owl). Changed aglappe strings to OWL (following new name of library)
gpl.txt 974 (9 years ago) by duarte: Adding license files
LICENSE 974 (9 years ago) by duarte: Adding license files
.project 1065 (9 years ago) by hstehr: reverting changes to .project and .classpath which were accidentally committed
.classpath 1291 (8 years ago) by cvehlow: Control database access! for CGAP
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svn:ignore .classpath .project .settings